GE CodeLink Rat Whole Genome Bioarray (~34 000 rat gene targets) Annotation Data (rwgcod)


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Documentation for package ‘rwgcod’ version 1.5.1

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rwgcod Bioconductor annotation data package
rwgcodACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
rwgcodCHR Map Manufacturer IDs to Chromosomes
rwgcodCHRLENGTHS A named vector for the length of each of the chromosomes
rwgcodCHRLOC Map Manufacturer IDs to Chromosomal Location
rwgcodENTREZID Map between Manufacturer Identifiers and Entrez Gene
rwgcodENZYME Map Between Manufacturer IDs and Enzyme Commission (EC) Numbers
rwgcodENZYME2PROBE Map Between Enzyme Commission Numbers and Manufacturer Identifiers
rwgcodGENENAME Map Between Manufacturer IDs and Genes
rwgcodGO Map between Manufacturer IDs and Gene Ontology (GO)
rwgcodGO2ALLPROBES Map Between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
rwgcodGO2PROBE Map Between Gene Ontology (GO) and Manufacturer Identifiers
rwgcodLOCUSID Map between Manufacturer Identifiers and Entrez Gene
rwgcodMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
rwgcodMAPCOUNTS Quality control information for rwgcod
rwgcodORGANISM The Organism for rwgcod
rwgcodPATH Mappings between probe identifiers and KEGG pathway identifiers
rwgcodPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
rwgcodPFAM Map Manufacturer IDs to Pfam IDs
rwgcodPMID Map between Manufacturer Identifiers and PubMed Identifiers
rwgcodPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
rwgcodPROSITE Map Manufacturer IDs to PROSITE ID
rwgcodQC Quality control information for rwgcod
rwgcodQCDATA Quality control information for rwgcod
rwgcodREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
rwgcodSUMFUNC Map between Manufacturer Identifiers and Gene Function Summaries
rwgcodSYMBOL Map between Manufacturer Identifiers and Gene Symbols
rwgcodUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers