AffymetrixDataTestFiles-package {AffymetrixDataTestFiles} | R Documentation |
This package contains annotation data files and sample data files of Affymetrix file formats. The files originate from the Affymetrix' Fusion SDK distribution. This package contains only data files.
None.
To install this package, see http://www.bioconductor.org/.
Data files are located in two different directory tree depending if they are annotation data files or sample data files. The roots of these two directory structures are:
system.file("annotationData", package="AffymetrixDataTestFiles") system.file("rawData", package="AffymetrixDataTestFiles")Where applicable, ASCII, XDA, and Calvin files are separated in different subdirectories for easy access to either type.
Directory structure:
annotationData/ chipTypes/ HG-Focus/ +-HG-Focus.PSI 3.ASCII/ +-HG-Focus.CDF Mapping10K_Xba131/ 1.XDA/ +-Mapping10K_Xba131.CDF 3.ASCII/ +-Mapping10K_Xba131.CDF Test3/ +-Test3.PSI 1.XDA/ +-Test3.CDF 3.ASCII/ +-Test3.CDF rawData/ FusionSDK_HG-Focus/ HG-Focus/ +-HG-Focus-1-121502.EXP +-HG-Focus-2-121502.EXP 1.XDA/ +-HG-Focus-1-121502.CHP +-HG-Focus-2-121502.CHP 2.Calvin/ +-HG-Focus-1-121502.CEL +-HG-Focus-1-121502.CHP +-HG-Focus-2-121502.CEL +-HG-Focus-2-121502.CHP 3.ASCII/ +-HG-Focus-1-121502.CEL +-HG-Focus-2-121502.CEL FusionSDK_HG-U133A/ HG-U133A/ 2.Calvin/ +-ethan1-1.CEL FusionSDK_Test3/ Test3/ +-Test3-1-121502.EXP +-Test3-2-121502.EXP 1.XDA/ +-Test3-1-121502.CHP +-Test3-2-121502.CHP 2.Calvin/ +-Test3-1-121502.CEL +-Test3-1-121502.CHP +-Test3-2-121502.CEL +-Test3-2-121502.CHP 3.ASCII/ +-Test3-1-121502.CEL +-Test3-2-121502.CEL
LGPL version 2.1 according to [1].
Adopted from [1] by Henrik Bengtsson, hb@stat.berkeley.edu, James Bullard, bullard@stat.berkeley.edu and Kasper Daniel Hansen, khansen@stat.berkeley.edu.
[1] Affymetrix Inc, Fusion Software Developers Kit (SDK), 2007.
http://www.affymetrix.com/support/developer/fusion/