\HeaderA{spYCCmeta}{metadata on yeast cell cycle microarray experiment}{spYCCmeta}
\keyword{datasets}{spYCCmeta}
\begin{Description}\relax
data.frame instance with metadata on 800 genes
\end{Description}
\begin{Usage}
\begin{verbatim}data(spYCCmeta)\end{verbatim}
\end{Usage}
\begin{Format}\relax
A data frame with 800 observations on the following 75 variables.
\describe{
\item[\code{Process}] a factor with levels \code{} \code{4-nitroquinoline-N-oxide resistance} \code{ATP synthesis} ...
\item[\code{Function}] a factor with levels \code{} \code{(1->6)-beta-glucan synthase subunit} \code{(putative) Glc7p regulatory subunit} ...
\item[\code{X}] a logical vector
\item[\code{Peak}] a factor with levels \code{G1} \code{G2/M} \code{M/G1} \code{S} \code{S/G2}
\item[\code{Phase.Order}] a numeric vector
\item[\code{Cluster.Order}] a numeric vector
\item[\code{ORF}] a factor with levels \code{} \code{YAL022C} \code{YAL040C} \code{YAL053W} \code{YAL067C} \code{YAR003W} \code{YAR007C}  ...
\item[\code{YPD}] a factor with levels \code{} \code{AAD10} \code{ACE2} \code{ADA2} \code{ADK2} \code{AFR1} \code{AGA1} \code{AGA2} \code{AGP1}  ...

\item[\code{SGD}] a factor with levels \code{} \code{AAD10} \code{ACE2} \code{ADA2} \code{ADK2} \code{AFR1} \code{AGA1} \code{AGA2} ...
\item[\code{YPD.1}] a factor with levels \code{} \code{YPD}
\item[\code{SGD.1}] a factor with levels \code{} \code{SGD}
\item[\code{MIPS}] a factor with levels \code{} \code{MIPS}
\item[\code{n1}] a numeric vector
\item[\code{n2}] a numeric vector
\item[\code{Geomean}] a numeric vector
\item[\code{Absolute}] a numeric vector
\item[\code{g1}] a numeric vector
\item[\code{g2}] a numeric vector
\item[\code{Geomean.1}] a numeric vector
\item[\code{Absolute.1}] a numeric vector
\item[\code{Deletion}] a factor with levels \code{irrelevant} \code{lethal} \code{undocumented} \code{viable}
\item[\code{Known.}] a factor with levels \code{Known} \code{New} \code{New }
\item[\code{Description}] a factor with levels \code{} \code{ Inhibitor of Cdc28p/Cln1p and Cdc28p/Cln2p complexes involved in cell cycle arrest for mating} \code{1,3-beta-D-glucan synthase} \code{3'-Phosphoadenylylsulfate reductase; part of the sulfate assimilation pathway } ...
\item[\code{Aggregate.Score}] a numeric vector
\item[\code{Phase}] a numeric vector
\item[\code{No..Elements}] a numeric vector
\item[\code{Most.Relevant.Promoter.Elements}] a factor with levels \code{} \code{AATAGATGACCCGATTTGGAAAAAGGTAAACAACAATG} \code{ATTTGATTGCCGAAAGAGGCAAAAC  GTAAATAGGTTGT} \code{C 156 TCTGCCAGCCAA} \code{C 253 AAAGCCAGCCAT} \code{C 256 TATGCCAGCCAA} \code{C 276 AAGGCCAGCCTC} \code{C 293 TTGACCAGCTAA} ...
\item[\code{X.1}] a factor with levels \code{} \code{ATATAGCGACCGAATCAGGAAAAG   GTCAACAACGAAG} \code{C 102 CGAGCCAGCATT} \code{C 252 AAGACCAGCATG} \code{C 301 AGTGCCAGCAAA} \code{C 496 GAAGCCAGCACA} \code{C 550 GCGGCCAGCAAC} \code{c 106 attACGCGaaaat} \code{c 112 aaaACGCGagaaa} \code{c 121 ggaACGCGacgc} ...
\item[\code{X.2}] a factor with levels \code{} \code{C 125 GCAACCAGCTCT} \code{C 146 CAAGCCAGCCAT} \code{C 195 CGCACCAGCAAC} \code{C 212 TATACCAGCGTT} \code{C 245 TAAACCAGCGCA} \code{C 402 TATGCCAGCAAA} \code{c 112 ttaACGCGatcga} \code{c 115 agtACGCGaaagg} \code{c 123 acaACGCGaacac} \code{c 127 gtgACGCGaaaaa} ...
\item[\code{X.3}] a factor with levels \code{} \code{C 307 AAGACCAGCATT} \code{c 163 ctgACGCGcgaaa} \code{c 190 aatACGCGagaaa} \code{c 220 tagACGCGcctta} \code{c 241 cgaACGCGaaact} \code{c 275 aaaACGCGaccgt} \code{c 282 aagACGCGatttt} \code{c 289 attACGCGcatta} \code{c 290 aggACGCGaaact}  ...
\item[\code{X.4}] a factor with levels \code{} \code{C 200 CAAACCAGCATC} \code{c 117 gtcACGCGaaaaa} \code{c 314 cctACGCGaaagt} \code{c 338 caaACGCGaaaaa} \code{c 359 acgACGCGccttc} \code{c 382 gttACGCGaagtc} \code{c 384 tcaACGCGaattt} \code{c 397 aaaACGCGaaaac} \code{c 440 gtgACGCGcggtt} ...
\item[\code{X.5}] a factor with levels \code{} \code{C 306 GGAGCCAGCGCG} \code{c 467 accACGCGaaaag} \code{c 588 gaaACGCGccaaa} \code{w 266 ATAACCAGCAAA} \code{w 383 cagACGCGagaac} \code{w 478 GGAGCCAGCGCG} \code{w401 tatCGCGAAAatt}
\item[\code{X.6}] a factor with levels \code{} \code{C 337 AGAGCCAGCAAG} \code{C 417 TCGGCCAGCAAT} \code{c 501 acaACGCGaaaaa} \code{w 370 gcgACGCGaaaaa} \code{w 447 AGAGCCAGCAAG}
\item[\code{X.7}] a factor with levels \code{} \code{C 388 GGAACCAGCAGA} \code{w 396 GGAACCAGCAGA}
\item[\code{Number}] a numeric vector
\item[\code{SCB}] a factor with levels \code{} \code{c 103 gacCACGAAAttt} \code{c 105 atgCACGAAAaag} \code{c 106 ctaCACGAAAcac} \code{c 108 tacCACGAAAgta} \code{c 110 ccaCACGAAAaga} \code{c 123 agaCACGAAAtgt} \code{c 127 acaCACGAAAacg} \code{c 181 cagCACGAAAtgg}  ...
\item[\code{SCB.1}] a factor with levels \code{} \code{c178 tgaCACGAAAaac} \code{c232 gaaCACGAAAtgc} \code{c539 gtaCACGAAAttc} \code{w269 agcCACGAAAtgc} \code{w347 tgaCACGAAAtgt} \code{w541 agtCACGAAAcgc} \code{w601 tgtCACGAAAagt}
\item[\code{SCB.2}] a factor with levels \code{} \code{c330 aacCACGAAAaaa} \code{c582 agtCACGAAAcgc} \code{w467 attCACGAAAtaa}
\item[\code{SCB.3}] a factor with levels \code{} \code{w435 atcCACGAAAatc}
\item[\code{X.8}] a factor with levels \code{} \code{w252 aacCACGAAAagt}
\item[\code{Number.1}] a numeric vector
\item[\code{SCB\_d}] a factor with levels \code{} \code{c 156 gatCGCGAAAttt} \code{c 184 cgaCGCGAAAatg} \code{c 218 cagCGCGAAAagt} \code{c 222 tatCGCGAAAaaa} \code{c 229 tgaCGCGAAAcgc} \code{c 237 tatCGCGAAAcga} \code{c 238 atcCGCGAAAgga} \code{c 283 aagCGCGAAAcaa}  ....
\item[\code{SCB\_d.1}] a factor with levels \code{} \code{c 126 tttCGCGAAActg} \code{c 415 tttCGCGAAAtct} \code{c 566 ttcCGCGAAAaaa} \code{c 592 aggCGCGAAAtac} \code{c 633 aaaCGCGAAAtgt} \code{c242 gaaCGCGAAActt} \code{c297 ctcCGCGAAAaat} \code{c306 tcgCGCGAAAaga}  ...
\item[\code{SCB\_d.2}] a factor with levels \code{} \code{c468 ccaCGCGAAAaga} \code{c508 tttCGCGAAAtct}
\item[\code{SCB\_d.3}] a factor with levels \code{} \code{c502 caaCGCGAAAaat}
\item[\code{Number.2}] a numeric vector
\item[\code{MCB}] a factor with levels \code{} \code{w 126 gcaACGCGTcgc} \code{w 187 caaACGCGTaca} \code{w 207 ctcACGCGTcgg} \code{w 209 attACGCGTtta} \code{w 226 cagACGCGTtgc} \code{w 228 acaACGCGTctt} \code{w 23 acaACGCGTgct} \code{w 267 cccACGCGTagg} ...
\item[\code{MCB.1}] a factor with levels \code{} \code{w111 gaaACGCGTtct} \code{w124 ttgACGCGTttc} \code{w128 gtgACGCGTtat} \code{w130 agaACGCGTtct} \code{w131 gcgACGCGTaac} \code{w138 aagACGCGTgaa} \code{w139 attACGCGTtta} \code{w153 ctaACGCGTttt} ...
\item[\code{MCB.2}] a factor with levels \code{} \code{w374 taaACGCGTcat}
\item[\code{MCB.3}] a factor with levels \code{} \code{w309 aggACGCGTaaa}
\item[\code{Number.3}] a numeric vector
\item[\code{MCB\_d}] a factor with levels \code{} \code{c 106 attACGCGaaaat} \code{c 109 acaACGCGactgg} \code{c 112 aaaACGCGagaaa} \code{c 115 agtACGCGaaagg} \code{c 117 gtcACGCGaaaaa} \code{c 121 ggaACGCGacgc} \code{c 127 gtgACGCGaaaaa} \code{c 129 acaACGCGcccga} ...
\item[\code{MCB\_d.1}] a factor with levels \code{} \code{c 123 acaACGCGaacac} \code{c 136 aatACGCGattgg} \code{c 147 gcaACGCGagaga} \code{c 158 tctACGCGcgaag} \code{c 163 ctgACGCGcgaaa} \code{c 176 gcgACGCGgttgt} \code{c 187 agtACGCGatttg} \code{c 189 gaaACGCGggcac} ...
\item[\code{MCB\_d.2}] a factor with levels \code{} \code{c 112 ttaACGCGatcga} \code{c 220 tagACGCGcctta} \code{c 294 ttcACGCGcttaa} \code{c 382 gttACGCGaagtc} \code{c 477 gcaACGCGcctgg} \code{c 501 acaACGCGaaaaa} \code{c 549 attACGCGcacg} \code{c 557 tgtACGCGcgaac} ...
\item[\code{MCB\_d.3}] a factor with levels \code{} \code{c 617 gaaACGCGcagta} \code{w 50 gtaACGCGctttt}
\item[\code{X.9}] a factor with levels \code{} \code{c 359 acgACGCGccttc}
\item[\code{Number.4}] a numeric vector
\item[\code{SFF}] a factor with levels \code{} \code{AATAGATGACCCGATTTGGAAAAAGGTAAACAACAATG} \code{ATTTGATTGCCGAAAGAGGCAAAAC  GTAAATAGGTTGT} \code{CAAAACAAACCCAATAAAGAAAATCCAAAATATAGAAC} \code{GTACTTTAACCTGTTTAGGAAAAAG  GTAAACAATAACA} \code{TCGAACAATTCTAAAAAGGTAAAT   AAAAACAATGGTA} ...
\item[\code{Number.5}] a factor with levels \code{} \code{1} \code{2} \code{3} \code{4} \code{ATATAGCGACCGAATCAGGAAAAGGTCAACAACGAAG}
\item[\code{Swi5}] a factor with levels \code{} \code{C 102 CGAGCCAGCATT} \code{C 156 TCTGCCAGCCAA} \code{C 200 CAAACCAGCATC} \code{C 252 AAGACCAGCATG} \code{C 253 AAAGCCAGCCAT} \code{C 256 TATGCCAGCCAA} \code{C 276 AAGGCCAGCCTC} \code{C 293 TTGACCAGCTAA} ...
\item[\code{Swi5.1}] a factor with levels \code{} \code{C 125 GCAACCAGCTCT} \code{C 146 CAAGCCAGCCAT} \code{C 195 CGCACCAGCAAC} \code{C 245 TAAACCAGCGCA} \code{C 301 AGTGCCAGCAAA} \code{C 306 GGAGCCAGCGCG} \code{C 307 AAGACCAGCATT} \code{C 402 TATGCCAGCAAA} ...
\item[\code{Swi5.2}] a factor with levels \code{} \code{C 212 TATACCAGCGTT} \code{C 337 AGAGCCAGCAAG} \code{c 19 AGAACCAGCTGA} \code{c 320 ACCACCAGCTTA} \code{c 545 ACCACCAGCGTA} \code{c 569 TTCACCAGCGGC} \code{c 642 GAGACCAGCGGA} \code{c 651 ATCACCAGCAAA} ...
\item[\code{Swi5.3}] a factor with levels \code{} \code{C 388 GGAACCAGCAGA} \code{C 417 TCGGCCAGCAAT} \code{c 336 TTTACCAGCTCA} \code{c 363 TGCACCAGCATT} \code{c 494 CTGGCCAGCAAG} \code{w 396 GGAACCAGCAGA}
\item[\code{Number.6}] a numeric vector
\item[\code{Swi5e}] a factor with levels \code{} \code{c 102 CGAGCCAGCATT} \code{c 137 TAGGCCAGCAAA} \code{c 155 ACAACCAGCAGT} \code{c 156 CTAACCAGCAAG} \code{c 16 AGAGCCAGCAGA} \code{c 174 TAAACCAGCATT} \code{c 184 ATGGCCAGCATA} \code{c 200 CAAACCAGCATC} ...
\item[\code{Swi5e.1}] a factor with levels \code{} \code{c 222 TTGACCAGCGCC} \code{c 256 TAAACCAGCAAA} \code{c 306 GGAGCCAGCGCG} \code{c 307 AAGACCAGCATT} \code{c 637 GGAGCCAGCGAT} \code{w 265 TAAACCAGCAAT} \code{w 266 ATAACCAGCAAA} \code{w 467 TGAGCCAGCAAT} \code{w 478 GGAGCCAGCGCG} \code{w 536 GAAACCAGCAAC} \code{w 554 ATGGCCAGCACC}
\item[\code{Swi5e.2}] a factor with levels \code{} \code{c 337 AGAGCCAGCAAG} \code{c 417 TCGGCCAGCAAT} \code{c 642 GAGACCAGCGGA} \code{w 447 AGAGCCAGCAAG}
\item[\code{Swi5e.3}] a factor with levels \code{} \code{c 388 GGAACCAGCAGA} \code{w 396 GGAACCAGCAGA}
\item[\code{Number.7}] a numeric vector
\item[\code{ECB}] a factor with levels \code{} \code{c 185 TTACCCATTTAGGAAA} \code{c 221 TTACCCAATTAGGAAA} \code{c 251 TTTCCCTTTAAGGAAA} \code{c 258 TTTCCCAAAAAGGAAA} \code{c 387 TTTCCCTTTTAGGAAA} \code{c 394 TTACCCACTTAGGAAA} \code{w 154 TTTCCCTTTTAGGAAA} \code{w 177 TTACCCACTTAGGAAA} \code{w 229 TTACCCAGAAAGGAAA} \code{w 378 TTTCCCTAATAGGAAA} \code{w 453 TTTCCCGTTTAGGAAA} \code{w 595 TTTCCCACTAAGGAAA}
\item[\code{Number.8}] a numeric vector
\item[\code{STE12}] a factor with levels \code{} \code{c 243 CCTTTTTCAGTTTCTATTTTTAACACTGAAACT} \code{w 112 CCCTATTTGGTTGCAATTCAATTCCGTGAAACC} \code{w 119 CCCAATGTAGAAAAGTACATCATATGAAACA} \code{w 218 CCTAATTGGGTAAGTACATGATGAAACA} \code{w 224 CCCAAAAAGGAAATTTACATGTTAAATGAAACC} ...
\item[\code{MIG1.sites}] a factor with levels \code{} \code{c 114 AATAGACTGGGG} \code{c 137 TCTATCCTGGGG} \code{c 147 TGAATGCTGGGG} \code{c 165 AATAAAGTGGGG} \code{c 215 TATAATGCGGGG} \code{c 304 AAATCGCCGGGG} \code{c 332 AAATATCTGGGG} \code{c 368 AATTGCGCGGGG} ...
\item[\code{X.10}] a factor with levels \code{} \code{c 161 AGTTTGGTGGGG} \code{c 262 AAGATGGTGGGG} \code{c 498 AAAAAACCGGGG} \code{c 499 AAAAATGCGGGG} \code{w 296 TATTCGGCGGGG} \code{w 578 CTTTTGCCGGGG}
\item[\code{X.11}] a logical vector
}
\end{Format}
\begin{Details}\relax
taken from the Spellman support web site.
\end{Details}
\begin{Source}\relax
\url{cellcycle-www.stanford.edu}
\end{Source}
\begin{References}\relax
PMID 9843569
\end{References}
\begin{Examples}
\begin{ExampleCode}
data(spYCCmeta)
spYCCmeta[1:5,1:6]
\end{ExampleCode}
\end{Examples}

