Package: beadarray
Title: Quality assessment and low-level analysis for Illumina BeadArray
        data
Version: 2.8.1
Date: 2012-05-01
Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie
Maintainer: Mark Dunning <Mark.Dunning@cancer.org.uk>
Description: The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio.  Methods for quality assessment and low-level analysis are provided.
Depends: R (>= 2.13.0), BiocGenerics (>= 0.3.2), Biobase (>= 2.17.8),
        methods, ggplot2
Imports: BeadDataPackR, limma, AnnotationDbi, stats4, BiocGenerics,
        reshape2
Suggests: lumi, vsn, affy, hwriter, beadarrayExampleData,
        illuminaHumanv3.db, gridExtra
License: GPL-2
biocViews: Microarray, OneChannel, QualityControl, Preprocessing
LazyData: yes
Packaged: 2012-10-09 05:13:26 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-10-09 10:43:17 UTC; windows
Archs: i386, x64
