% -*- mode: noweb; noweb-default-code-mode: R-mode; -*-
%\VignetteIndexEntry{pumadata User Guide}
%\VignetteKeywords{Preprocessing, Affymetrix, Clustering}
%\VignetteDepends{Biobase}
%\VignettePackage{pumadata}
%documentclass[12pt, a4paper]{article}
\documentclass[12pt]{article}

\usepackage{amsmath,pstricks}
% With MikTeX 2.9, using pstricks also requires using auto-pst-pdf or running
% pdflatex will fail. Note that using auto-pst-pdf requires to set environment
% variable MIKTEX_ENABLEWRITE18=t on Windows, and to set shell_escape = t in
% texmf.cnf for Tex Live on Unix/Linux/Mac.
\usepackage{auto-pst-pdf}
\usepackage{hyperref}
\usepackage{float}
\usepackage[authoryear,round]{natbib}

\restylefloat{figure}

\textwidth=6.2in
\textheight=8.5in
%\parskip=.3cm
\oddsidemargin=.1in
\evensidemargin=.1in
\headheight=-.3in

\newcommand{\scscst}{\scriptscriptstyle}
\newcommand{\scst}{\scriptstyle}
\newcommand{\Rfunction}[1]{{\texttt{#1}}}
\newcommand{\Robject}[1]{{\texttt{#1}}}
\newcommand{\Rpackage}[1]{{\textit{#1}}}
\newcommand{\puma}{\Rpackage{puma}}
\newcommand{\limma}{\Rpackage{limma}}

\author{Richard Pearson}
\begin{document}
\title{pumadata User Guide}

\maketitle

\sloppy
\SweaveOpts{keep.source=TRUE}

<<echo=FALSE, eval=FALSE>>=
options(width = 70)
@

\section{Introduction}
This is a simple data package, to be used with the \Rpackage{puma} package. Please refer to the \Rpackage{puma} vignette for more details.

\end{document}
