# Two-sample tests on a graph

## Documentation for package ‘DEGraph’ version 1.0.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

AN.test | Performs the Adaptive Neyman test of Fan and Lin (1998)
annLoi2008 | Annotation data used in the DEGraph package vignette
BS.test | Performs the test of Bai and Saranadasa (1996)
classLoi2008 | Tamoxifen treatment resistance status data used in the DEGraph package
exprLoi2008 | Gene expression data used in the DEGraph package vignette
getConnectedComponentList | Given a graph, returns a list of its connected components (which are
getKEGGPathways | Builds a graph for each of the KEGG pathways
getSignedGraph | Given a graph, builds a signed version of the adjacency matrix taking
graph.T2.test | Performs the Hotelling T2 test in Fourier space
grListKEGG | KEGG networks used in the DEGraph package vignette
hyper.test | Performs an hypergeometric test of enrichment of a set of hypotheses in
laplacianFromA | Calculates the Laplacian associated to an adjacency matrix
plotValuedGraph | Plots a graph with nodes colored according to a quantitative variable
randomWAMGraph | Generates a random graph
testOneConnectedComponent | Applies a series of two-sample tests to a connected graph using various
testOneGraph | Applies a serie of two-sample tests to each connected component of a
twoSampleFromGraph | Given a basis (typically the eigenvectors of a graph Laplacian), builds
writeAdjacencyMatrix2KGML | Writes an adjacency matrix into an XML file