Package: GenomicRanges
Title: Representation and manipulation of genomic intervals
Description: The ability to efficiently store genomic annotations and
        alignments is playing a central role when it comes to analyze
        high-throughput sequencing data (a.k.a. NGS data). The package
        defines general purpose containers for storing genomic
        intervals as well as more specialized containers for storing
        alignments against a reference genome.
Version: 1.2.3
Author: P. Aboyoun, H. Pages and M. Lawrence
Maintainer: Biocore Team c/o BioC user list
        <bioconductor@stat.math.ethz.ch>
biocViews: Genetics, Sequencing, HighThroughputSequencing, Annotation
Depends: R (>= 2.8.0), methods, IRanges (>= 1.7.31)
Imports: methods, IRanges
LinkingTo: IRanges
Suggests: RUnit, BSgenome, GenomicFeatures, Rsamtools,
        EatonEtAlChIPseq, leeBamViews, org.Sc.sgd.db,
        BSgenome.Scerevisiae.UCSC.sacCer2
License: Artistic-2.0
Collate: seqnames.R strand.R Seqinfo-class.R GenomicRanges-class.R
        GRanges-class.R GRangesList-class.R GRanges-setops.R
        findOverlaps-methods.R cigar-utils.R GappedAlignments-class.R
        SummarizedExperiment-class.R test_GenomicRanges_package.R zzz.R
Packaged: 2011-01-07 12:56:59 UTC; biocbuild
Built: R 2.12.1; universal-apple-darwin9.8.0; 2011-01-07 17:26:55 UTC; unix
Archs: i386, ppc, x86_64
