Likelihood Ratio Test Statistic (E2)
This options provides the analysis using the E2 test statistics based on p-values obtained from its null hypothesis distribution. The provided adjustment methods are BH, BY, Holm, SidakSS, Sidak SD, Holm, Hochberg and Bonferroni. Based on the specified adjustment methods and overall significant level, the list of significant genes along isotonic means difference, test statistic value, raw and adjusted $-values, will be produced.
Analysis > Likelihood Ratio Test (E2)
Screenshot of the main dialog box of Likelihood Ratio Test (E2) analysis

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Screenshot of the list of significant genes
Screenshot of the plot of Fold change vs. E2