# Graphics related functions for Bioconductor

## Documentation for package ‘geneplotter’ version 1.28.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

alongChrom | A function for plotting expression data from an ExpressionSet for a
amplicon.plot | Create an amplicon plot
buildACMainLabel | A function for plotting expression data from an ExpressionSet for a
cColor | A function for marking specific probes on a cPlot.
closeHtmlPage | Open and close an HTML file for writing.
connection-class | Virtual S4 classes for method dispatching
cPlot | A plotting function for chromosomes.
cScale | A function for mapping chromosome length to a number of points.
cullACXPoints | A function for plotting expression data from an ExpressionSet for a
dChip.colors | A function to get the Red-Blue color scheme used by dChip
defMapFun | A function to plot a graph colored by expression data
dispACXaxis | A function for plotting expression data from an ExpressionSet for a
doACCumPlot | A function for plotting expression data from an ExpressionSet for a
doACImagePlot | A function for plotting expression data from an ExpressionSet for a
doACLocalPlot | A function for plotting expression data from an ExpressionSet for a
doACMatPlot | A function for plotting expression data from an ExpressionSet for a
emptyACPlot | A function for plotting expression data from an ExpressionSet for a
expressionSet133a | A small dataset for testing
file-class | Virtual S4 classes for method dispatching
fixACPhysPoints | A function for plotting expression data from an ExpressionSet for a
getACClosestPos | A function for plotting expression data from an ExpressionSet for a
getACDataEnv | A function for plotting expression data from an ExpressionSet for a
getACExprs | A function for plotting expression data from an ExpressionSet for a
getACGeneSyms | A function for plotting expression data from an ExpressionSet for a
getACPlotLabs | A function for plotting expression data from an ExpressionSet for a
getACStrandVals | A function for plotting expression data from an ExpressionSet for a
GetColor | A function to get the Red-Blue color scheme used by dChip
getPlotExpressionColors | A function to plot a graph colored by expression data
greenred.colors | A function to get the Red-Blue color scheme used by dChip
groupedHeatmap | Heatmap of a matrix with grouped rows and columns
highlightACDups | A function for plotting expression data from an ExpressionSet for a
histStack | Stacked histogram
imageMap | Write an HTML IMG tag together with a MAP image map.
imageMap-method | Write an HTML IMG tag together with a MAP image map.
imageMap-methods | Write an HTML IMG tag together with a MAP image map.
IMCAEntrezLink | A function to plot a graph colored by expression data
limitACXRange | A function for plotting expression data from an ExpressionSet for a
make.chromOrd | Make a chromOrd object
Makesense | Produce Smoothed Sense/Anti-sense For All Chromosomes
Makesense-method | Produce Smoothed Sense/Anti-sense For All Chromosomes
multidensity | Multiple empirical cumulative distribution functions (ecdf) and
multidensity.formula | Multiple empirical cumulative distribution functions (ecdf) and
multidensity.list | Multiple empirical cumulative distribution functions (ecdf) and
multidensity.matrix | Multiple empirical cumulative distribution functions (ecdf) and
multiecdf | Multiple empirical cumulative distribution functions (ecdf) and
multiecdf.formula | Multiple empirical cumulative distribution functions (ecdf) and
multiecdf.list | Multiple empirical cumulative distribution functions (ecdf) and
multiecdf.matrix | Multiple empirical cumulative distribution functions (ecdf) and
openHtmlPage | Open and close an HTML file for writing.
plotChr | Plot Smoothed Sense/Anti-sense of Specified Chromosomes
plotExpressionGraph | A function to plot a graph colored by expression data
saveeps | Save the contents of the current graphics device to a file
savepdf | Save the contents of the current graphics device to a file
savepng | Save the contents of the current graphics device to a file
savetiff | Save the contents of the current graphics device to a file
scaleACData | A function for plotting expression data from an ExpressionSet for a