@string	(SCRIBE-NOTE = {.....})



@Article{Chiaretti04,
  author =	 {{Chiaretti, S., {\it et al.}}},
  title =	 {Gene expression profile of adult {T}-cell acute
                  lymphocytic leukemia identifies distinct subsets of
                  patients with different response to therapy and
                  survival},
  journal =	 {Blood},
  year =	 {2004},
  OPTkey =	 {},
  volume =	 {103},
  number =	 {7},
  pages =	 {2771-2778},
  month =	 {April},
  OPTnote =	 {},
  OPTannote =	 {}
}


@Article{Alexa2006,
author="Alexa, Adrian
and Rahnenf{\"u}hrer, J{\"o}rg
and Lengauer, Thomas",
title="Improved scoring of functional groups from gene expression data by decorrelating GO graph structure.",
journal="Bioinformatics (Oxford, England)",
year="2006",
month="Jul",
day="01",
volume="22",
issue="13",
pages="1600--1607",
keywords="GO",
note="10.1093/bioinformatics/btl140",
issn="1367-4803",
url="http://www.ncbi.nlm.nih.gov/pubmed/16606683?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum"
}





@Article{Draghici2006,
author="Draghici, Sorin
and Sellamuthu, Sivakumar
and Khatri, Purvesh",
title="Babel's tower revisited: a universal resource for cross-referencing across annotation databases",
journal="Bioinformatics (Oxford, England)",
year="2006",
month="Oct",
day="26",
volume="22",
issue="23",
pages="btl372v1--2939",
keywords="annotations",
keywords="ontologies",
keywords="enrichment",
keywords="review",
note="10.1093/bioinformatics/btl372",
issn="1460-2059",
url="http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btl372v1"
}




@Article{Goeman2007,
author="Goeman, Jelle J.
and B{\"u}hlmann, Peter",
title="Analyzing gene expression data in terms of gene sets: methodological issues",
journal="Bioinformatics (Oxford, England)",
year="2007",
month="Feb",
day="15",
volume="23",
issue="8",
pages="980--987",
keywords="GSEA",
keywords="Hypothesis",
keywords="ontologies",
keywords="GO",
keywords="testing",
keywords="enrichment",
note="10.1093/bioinformatics/btm051",
issn="1460-2059",
url="http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/8/980"
}



@Article{Grossmann2007,
author="Grossmann, Steffen
and Bauer, Sebastian
and Robinson, Peter N.
and Vingron, Martin",
title="Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis",
journal="Bioinformatics",
year="2007",
month="Sep",
day="11",
volume="23",
issue="22",
pages="3024",
keywords="annotations",
keywords="ontologies",
keywords="GO",
keywords="topology",
note="10.1093/bioinformatics/btm440",
issn="1460-2059",
url="http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/22/3024"
}


@Article{YonRhee2008,
author="Yon Rhee, Seung
and Wood, Valerie
and Dolinski, Kara
and Draghici, Sorin",
title="Use and misuse of the gene ontology annotations.",
journal="Nature reviews. Genetics",
year="2008",
month="May",
day="13",
volume="advanced online publication",
issue="7",
pages="509-515",
keywords="annotations",
keywords="ontologies",
keywords="GO",
keywords="review",
note="10.1038/nrg2363",
issn="1471-0064",
url="http://www.ncbi.nlm.nih.gov/pubmed/18475267"
}



@Article{GOC01,
  author =	 {Gene Ontology Consortium},
  title =	 {Creating the {G}ene {O}ntology {R}esource: {D}esign
                  and {I}mplementation},
  journal =	 {Genome Research},
  year =	 {2001},
  OPTkey =	 {},
  volume =	 {11},
  OPTnumber =	 {},
  pages =	 {1425-1433},
  OPTmonth =	 {},
  note =	 {Cold Spring Harbor Laboratory Press},
  OPTannote =	 {www.genome.org}
}


@Article{Ackermann2009,
author="Ackermann, Marit
and Strimmer, Korbinian",
title="A general modular framework for gene set enrichment analysis",
journal="BMC Bioinformatics",
year="2009",
month="Feb",
day="03",
volume="10",
issue="1",
pages="47",
keywords="simulations",
keywords="GSEA",
keywords="GO",
keywords="enrichment",
note="10.1186/1471-2105-10-47",
url="http://www.biomedcentral.com/1471-2105/10/47"
}

