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License: Artistic-2.0 Package: AffyExpress Version: 1.16.0 Depends: R (>= 2.5.0), affy (>= 1.23.4), limma Suggests: simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma License: LGPL Package: affyILM Version: 1.2.0 Depends: R (>= 2.10.0), methods Imports: affxparser (>= 1.16.0), gcrma, affy, graphics, methods Suggests: AffymetrixDataTestFiles License: GPL-3 Package: affyio Version: 1.18.0 Depends: R (>= 2.6.0), methods License: LGPL (>= 2) Package: affylmGUI Version: 1.24.0 Depends: limma, tcltk, affy, Biobase, affyio Suggests: tkrplot, affyPLM, R2HTML, xtable License: LGPL Package: affyPara Version: 1.10.0 Depends: R (>= 2.5.0), methods, affy (>= 1.20.0), snow (>= 0.2-3), vsn (>= 3.6.0), aplpack (>= 1.1.1) Suggests: affydata Enhances: affy License: GPL-3 Package: affypdnn Version: 1.24.0 Depends: R (>= 2.3.0), affy (>= 1.5) Suggests: affydata, hgu95av2probe License: LGPL Package: affyPLM Version: 1.26.1 Depends: R (>= 2.6.0), affy (>= 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annotationTools Version: 1.22.0 Imports: Biobase, stats License: GPL Package: apComplex Version: 2.16.0 Depends: graph, RBGL Imports: Rgraphviz, stats, org.Sc.sgd.db License: LGPL Package: aroma.light Version: 1.18.4 Depends: R.methodsS3 (>= 1.2.1) Suggests: R.oo (>= 1.7.5), R.utils (>= 1.6.1), princurve (>= 1.1-10) License: LGPL (>= 2.1) Package: ArrayExpress Version: 1.10.0 Depends: R (>= 2.9.0), Biobase (>= 2.4.0) Imports: XML, affy, limma Suggests: arrayQualityMetrics License: Artistic-2.0 Package: arrayMvout Version: 1.8.0 Depends: R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy, lumi Imports: simpleaffy, mdqc, affyContam, Suggests: MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf License: Artistic-2.0 Package: arrayQuality Version: 1.28.0 Depends: R (>= 2.2.0) Imports: graphics, grDevices, grid, gridBase, hexbin, limma, marray, methods, RColorBrewer, stats, utils Suggests: mclust, MEEBOdata, HEEBOdata License: LGPL Package: arrayQualityMetrics 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methods Imports: limma, methods, graphics, stats, utils License: LGPL Package: CAMERA Version: 1.6.0 Depends: R (>= 2.1.0), methods, xcms (>= 1.13.5) Imports: methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc Suggests: faahKO License: GPL (>= 2) Package: Category Version: 2.16.1 Depends: AnnotationDbi (>= 0.1.15), Biobase (>= 1.15.29) Imports: graph, methods, Biobase (>= 1.15.29), AnnotationDbi (>= 0.1.15), RBGL, GSEABase, genefilter, annotate (>= 1.15.6), stats, utils Suggests: EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, Matrix, KEGG.db, GO.db, SNPchip, geneplotter, limma, lattice, graph, Biobase, genefilter, methods License: Artistic-2.0 Package: cellHTS Version: 1.20.0 Depends: R (>= 2.5.0), prada (>= 1.9.4), RColorBrewer, Biobase (>= 1.11.12), genefilter (>= 1.11.2) Suggests: Category, GO.db, vsn (>= 2.0.35) License: Artistic-2.0 Package: cellHTS2 Version: 2.14.0 Depends: RColorBrewer, Biobase, methods, genefilter, splots, vsn, 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grDevices, graphics, utils Suggests: charmData, BSgenome.Hsapiens.UCSC.hg18 License: LGPL (>= 2) Package: ChemmineR Version: 2.2.19 Depends: R (>= 2.10.0), methods Imports: graphics, methods, stats, RCurl License: Artistic-2.0 Package: ChIPpeakAnno Version: 1.6.0 Depends: biomaRt, multtest, IRanges, Biostrings, BSgenome,BSgenome.Ecoli.NCBI.20080805, GO.db,org.Hs.eg.db,limma Imports: biomaRt, multtest, IRanges, Biostrings, BSgenome, GO.db,limma License: GPL (>= 2) Package: chipseq Version: 1.0.0 Depends: methods, IRanges (>= 1.7.13), GenomicRanges (>= 1.1.29), BSgenome, ShortRead Imports: BSgenome, GenomicRanges, IRanges, lattice, methods, ShortRead, stats Suggests: GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9 License: Artistic-2.0 Package: ChIPseqR Version: 1.4.0 Depends: R (>= 2.10.0), ShortRead, methods Imports: Biostrings, fBasics, GenomicRanges, graphics, grDevices, HilbertVis, IRanges, methods, ShortRead, stats, timsac, utils License: GPL (>= 2) Package: ChIPsim Version: 1.4.0 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e1071, stats Suggests: cluster License: GPL (>= 2) Package: cosmo Version: 1.16.0 Depends: R (>= 2.4.0), methods, utils, seqLogo Suggests: cosmoGUI License: file LICENSE Package: cosmoGUI Version: 1.16.0 Depends: tkWidgets, cosmo License: LGPL (>= 2) Package: CRImage Version: 1.0.0 Depends: EBImage Imports: MASS, e1071, foreach License: Artistic-2.0 Package: crlmm Version: 1.8.11 Depends: R (>= 2.11.0), methods, Biobase (>= 2.9.0), oligoClasses (>= 1.11.7) Imports: affyio (>= 1.15.2), ellipse, ff, genefilter, mvtnorm, preprocessCore, splines, stats, SNPchip, utils Suggests: hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.2), snpMatrix, ellipse License: Artistic-2.0 Package: CSAR Version: 1.2.0 Depends: R(>= 2.6.0) Imports: stats, utils Suggests: ShortRead, Biostrings License: Artistic-2.0 Package: ctc Version: 1.24.0 Depends: amap License: GPL Package: cycle Version: 1.4.0 Depends: R (>= 2.10.0), Mfuzz Imports: Biobase, stats License: GPL-2 Package: daMA Version: 1.22.0 Imports: MASS, stats License: GPL (>= 2) Package: DAVIDQuery Version: 1.10.1 Depends: RCurl (>= 1.4.0), utils License: GPL-2 Package: ddCt Version: 1.4.0 Depends: R (>= 2.3.0), Biobase (>= 1.10.0), RColorBrewer (>= 0.1-3), xtable, lattice, methods License: LGPL-3 Package: DEDS Version: 1.24.0 Depends: R (>= 1.7.0) License: LGPL Package: DEGraph Version: 1.0.0 Depends: R (>= 2.10.0), R.utils Imports: graph, KEGGgraph, lattice, mvtnorm, R.methodsS3, RBGL, Rgraphviz, rrcov Suggests: corpcor, fields, graph, KEGGgraph, lattice, marray, RBGL, rrcov, Rgraphviz License: GPL-3 Package: DEGseq Version: 1.4.3 Depends: R (>= 2.8.0), qvalue, ShortRead, samr, methods Imports: graphics, grDevices, methods, stats, utils License: LGPL (>= 2) Package: DESeq Version: 1.2.1 Depends: Biobase, locfit Imports: genefilter, geneplotter, methods License: GPL (>= 3) Package: DFP Version: 1.8.0 Depends: methods, Biobase (>= 2.5.5) License: GPL-2 Package: diffGeneAnalysis Version: 1.32.0 Imports: graphics, grDevices, minpack.lm (>= 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graph, multtest License: GPL (>= 2) Package: edd Version: 1.28.0 Depends: methods, golubEsets, Biobase, class, nnet, xtable License: LGPL Package: edgeR Version: 2.0.5 Depends: R (>= 2.3.0), methods Imports: limma Suggests: MASS License: LGPL (>= 2) Package: eisa Version: 1.2.0 Depends: methods, isa2, Biobase, AnnotationDbi, Category, genefilter, DBI Suggests: igraph (>= 0.5.2), Matrix, GOstats, GO.db, KEGG.db, biclust, MASS, xtable, ALL, hgu95av2.db License: GPL (>= 2) Package: exonmap Version: 2.8.0 Depends: R (>= 2.0), affy (>= 1.23.4), genefilter, RColorBrewer, RMySQL (>= 0.6-0), DBI, methods License: GPL (>= 2) Package: explorase Version: 1.14.0 Depends: R (>= 2.6.2) Imports: limma, rggobi, RGtk2 Suggests: cairoDevice License: GPL Package: ExpressionView Version: 1.2.0 Depends: caTools, bitops Imports: methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi Suggests: ALL, hgu95av2.db, biclust, GO.db, KEGG.db, AnnotationDbi, affy License: GPL (>= 2) Package: externalVector Version: 1.16.0 Depends: R (>= 1.8.0), methods, stats License: LGPL Package: fabia Version: 1.2.0 Depends: R (>= 2.8.0), methods Imports: methods, graphics Suggests: utils License: LGPL (>= 2.1) Package: factDesign Version: 1.26.0 Depends: Biobase (>= 2.5.5) Imports: stats Suggests: affy, genefilter License: LGPL Package: farms Version: 1.2.0 Depends: R (>= 2.8), affy (>= 1.20.0), MASS, methods Imports: affy, MASS, Biobase (>= 1.13.41), methods, graphics Suggests: affydata, Biobase, utils License: LGPL (>= 2.1) Package: fdrame Version: 1.22.0 Imports: tcltk, graphics, grDevices, stats, utils License: GPL (>= 2) Package: flagme Version: 1.6.0 Depends: gcspikelite Imports: gplots, graphics, MASS, methods, SparseM, stats, utils, xcms License: LGPL (>= 2) Package: flowClust Version: 2.8.0 Depends: R(>= 2.5.0), methods, mnormt, ellipse, Biobase, flowCore(>= 1.11.23) Suggests: snowfall Enhances: multicore License: Artistic-2.0 Package: flowCore Version: 1.16.0 Depends: R (>= 2.8.1), Biobase, rrcov Imports: Biobase, feature, graph, graphics, grDevices, MASS, methods, rrcov, stats, utils Suggests: Rgraphviz, flowViz, ncdf License: Artistic-2.0 Package: flowFlowJo Version: 1.8.0 Depends: R (>= 2.5.0), MASS, Imports: flowCore, XML (>= 1.96), methods, Biobase License: GPL (>= 3) Package: flowFP Version: 1.6.0 Depends: R(>= 2.5.0), flowCore, flowViz Imports: Biobase, flowCore, flowViz, graphics, grDevices, methods, stats License: Artistic-2.0 Package: flowMeans Version: 1.2.0 Depends: R (>= 2.10.0) Imports: Biobase, graphics, grDevices, methods, rrcov, stats, feature, flowCore License: Artistic-2.0 Package: flowMerge Version: 1.4.0 Depends: flowClust, flowCore, methods,snow Imports: rrcov, flowClust,flowCore, graphics, methods, rrcov, stats, utils License: Artistic-2.0 Package: flowQ Version: 1.10.0 Depends: R (>= 2.4.0), outliers, lattice, flowViz, methods, mvoutlier, bioDist, parody,RColorBrewer,latticeExtra Imports: geneplotter, flowCore, flowViz License: Artistic-2.0 Package: flowStats Version: 1.8.0 Depends: R (>= 2.9.0), flowCore (>= 1.10.0), fda (>= 2.1.3), mvoutlier, cluster Imports: MASS, flowViz, flowCore, fda (>= 2.1.3), Biobase, methods, grDevices, graphics, stats, utils, KernSmooth, lattice Suggests: flowViz, xtable License: Artistic-2.0 Package: flowTrans Version: 1.2.0 Depends: R (>= 2.11.0), flowCore, flowViz,flowClust Imports: flowCore, methods, flowViz, stats, flowClust License: Artistic-2.0 Package: flowUtils Version: 1.10.0 Depends: R (>= 2.2.0), flowCore (>= 1.2.0) Imports: Biobase, flowCore, graph, methods, RUnit, stats, utils, XML, flowViz Suggests: gatingMLData License: Artistic-2.0 Package: flowViz Version: 1.14.0 Depends: R (>= 2.7.0), flowCore (>= 1.5.17), lattice Imports: Biobase, flowCore, graphics, grDevices, grid, KernSmooth, lattice, latticeExtra, MASS, methods, RColorBrewer, stats, utils Suggests: RColorBrewer, IDPmisc License: Artistic-2.0 Package: frma Version: 1.2.0 Depends: R (>= 2.10.0), Biobase (>= 2.6.0), affyPLM (>= 1.22.0) Imports: Biobase, MASS, affy, affyPLM, methods, preprocessCore, utils Suggests: hgu133afrmavecs, hgu133abarcodevecs, frmaExampleData License: GPL (>= 2) Package: frmaTools Version: 1.2.0 Depends: R (>= 2.10.0), affyPLM Imports: Biobase, methods, affy, preprocessCore, stats, utils Suggests: frma, affyPLM, hgu133aprobe, hgu133atagprobe, hgu133plus2probe, hgu133acdf, hgu133atagcdf, hgu133plus2cdf, hgu133afrmavecs, frmaExampleData License: GPL (>= 2) Package: gaga Version: 1.10.0 Depends: R (>= 2.5.0), Biobase, coda License: GPL (>= 2) Package: gage Version: 2.0.0 Depends: graph, multtest Suggests: gageData, GO.db, GSEABase, KEGG.db, org.Hs.eg.db License: GPL (>= 2.0) Package: gaggle Version: 1.18.0 Depends: R (>= 2.3.0), rJava (>= 0.4), graph (>= 1.10.2), RUnit (>= 0.4.17) License: GPL (>= 2) Package: gcrma Version: 2.22.0 Depends: R (>= 2.6.0), affy (>= 1.23.2), graphics, methods, stats, utils Imports: Biobase, affy (>= 1.23.2), affyio (>= 1.13.3), Biostrings (>= 2.11.32), splines Suggests: affydata, tools, splines, hgu95av2cdf, hgu95av2probe License: LGPL Package: genArise Version: 1.26.0 Depends: R (>= 1.7.1), locfit, tkrplot, methods Imports: graphics, grDevices, methods, stats, tcltk, utils, xtable License: file LICENSE Package: gene2pathway Version: 1.8.1 Depends: R (>= 2.10.0), kernlab (>= 0.9), biomaRt (>= 1.12.1), KEGGSOAP (>= 1.12.0), RBGL, AnnotationDbi,org.Dm.eg.db, keggorthology (>= 2.0) Imports: SSOAP, RCurl License: GPL (>= 2) Package: GeneAnswers Version: 1.6.0 Depends: R (>= 2.10.0), igraph, RCurl, annotate, Biobase (>= 1.12.0), methods, XML, RSQLite, MASS, rgl, Heatplus, RColorBrewer Imports: graph, Rgraphviz, RBGL, annotate Suggests: GO.db, KEGG.db, biomaRt, AnnotationDbi, org.Hs.eg.db, org.Rn.eg.db, org.Mm.eg.db, org.Dm.eg.db License: LGPL (>= 2) Package: genefilter Version: 1.32.0 Imports: AnnotationDbi, annotate (>= 1.13.7), Biobase (>= 1.99.10), graphics, methods, stats, survival Suggests: Biobase (>= 1.99.10), class, hgu95av2.db, methods, tkWidgets, ALL License: Artistic-2.0 Package: GeneGA Version: 1.0.0 Depends: GeneRfold, seqinr, hash, methods License: GPL-2 Package: GeneMeta Version: 1.22.0 Depends: R (>= 2.5.0), methods, Biobase (>= 2.5.5), genefilter Imports: methods, Biobase (>= 2.5.5) License: Artistic-2.0 Package: geneplotter Version: 1.28.0 Depends: Biobase (>= 2.5.5), annotate, lattice Imports: annotate, AnnotationDbi, Biobase (>= 2.5.5), graphics, grDevices, grid, methods, RColorBrewer, stats, utils Suggests: Biobase (>= 2.5.5), Rgraphviz, annotate, fibroEset, hgu95av2.db, hu6800.db, hgu133a.db License: Artistic-2.0 Package: GeneR Version: 2.20.0 Depends: R (>= 2.6.0) Imports: graphics, stats, utils License: CeCILL-2 Package: geneRecommender Version: 1.22.0 Depends: R (>= 1.8.0), Biobase (>= 1.4.22), methods Imports: Biobase, methods, stats License: GPL (>= 2) Package: GeneRegionScan Version: 1.6.0 Depends: methods, Biobase (>= 2.5.5), Biostrings Imports: Biobase (>= 2.5.5), affxparser, RColorBrewer, Biostrings Suggests: BSgenome, affy, AnnotationDbi License: GPL (>= 2) Package: GeneRfold Version: 1.8.0 Depends: R (>= 2.6.0), GeneR License: CeCILL-2 Package: GeneSelectMMD Version: 1.6.0 Depends: R (>= 2.8.0), Biobase Imports: Biobase, MASS, graphics, stats, survival Suggests: ALL License: GPL (>= 2) Package: GeneSelector Version: 2.6.0 Depends: R (>= 2.5.1), methods Imports: Biobase, graphics, grDevices, methods, stats, samr Suggests: multtest, siggenes, samr, limma License: GPL (>= 2) Package: GeneSpring Version: 2.24.0 Depends: R (>= 2.0.1), Biobase (>= 1.5.0), methods Imports: Biobase, methods, utils License: GPL Package: GeneticsDesign Version: 1.18.0 Imports: gmodels, graphics, gtools (>= 2.4.0), mvtnorm, stats License: GPL Package: GeneticsPed Version: 1.12.0 Depends: R (>= 2.4.0), gdata (>= 2.3.0), genetics (>= 1.3.0), MASS License: LGPL (>= 2.1) Package: GeneTraffic Version: 1.22.0 Depends: R (>= 1.8.1), Biobase (>= 1.4.0), methods Imports: Biobase, digest, marray (>= 1.5.10), methods, SSOAP (>= 0.1.2), utils License: GPL Package: genoCN Version: 1.2.0 Imports: graphics, stats, utils License: GPL (>= 2) Package: GenomeGraphs Version: 1.10.0 Depends: methods, biomaRt, grid License: Artistic-2.0 Package: genomeIntervals Version: 1.6.0 Depends: R (>= 2.8.0), intervals (>= 0.12.2), Biobase, methods License: Artistic-2.0 Package: genomes Version: 1.6.0 Depends: lattice Imports: XML License: Artistic-2.0 Package: GenomicFeatures Version: 1.2.3 Depends: IRanges (>= 1.7.7), GenomicRanges (>= 0.0.9) Imports: methods, DBI (>= 0.2-5), RSQLite (>= 0.8-1), IRanges, GenomicRanges, Biostrings (>= 2.17.6), rtracklayer (>= 1.7.11), biomaRt, RCurl, utils Suggests: rtracklayer, biomaRt, org.Mm.eg.db, GenomicFeatures.Hsapiens.UCSC.hg18, Biostrings, BSgenome, BSgenome.Hsapiens.UCSC.hg18 (>= 1.3.14), RUnit License: Artistic-2.0 Package: GenomicRanges Version: 1.2.3 Depends: R (>= 2.8.0), methods, IRanges (>= 1.7.31) Imports: methods, IRanges LinkingTo: IRanges Suggests: RUnit, BSgenome, GenomicFeatures, Rsamtools, EatonEtAlChIPseq, leeBamViews, org.Sc.sgd.db, BSgenome.Scerevisiae.UCSC.sacCer2 License: Artistic-2.0 Package: Genominator Version: 1.4.2 Depends: methods, RSQLite, DBI (>= 0.2-5), IRanges, GenomeGraphs Imports: graphics, stats, utils Suggests: biomaRt, ShortRead, yeastRNASeq License: Artistic-2.0 Package: GEOmetadb Version: 1.10.0 Depends: GEOquery,RSQLite License: Artistic-2.0 Package: GEOquery Version: 2.17.5 Depends: methods, Biobase Imports: XML, RCurl Suggests: limma, RUnit License: GPL-2 Package: GEOsubmission Version: 1.2.0 Imports: affy, Biobase, utils License: GPL (>= 2) Package: GGBase Version: 3.10.0 Depends: R (>= 2.7.0), methods, Biobase (>= 2.9.0), snpMatrix(>= 1.7.6), RSQLite Imports: AnnotationDbi, GSEABase Suggests: illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20071016, SNPlocs.Hsapiens.dbSNP.20090506 License: Artistic-2.0 Package: GGtools Version: 3.8.4 Depends: R (>= 2.7.0), methods, Biobase (>= 1.11.26), GGBase (>= 3.7.5), snpMatrix(>= 1.13.3), annotate, IRanges, rtracklayer, org.Hs.eg.db, GenomicRanges, ff Imports: AnnotationDbi, IRanges (>= 1.1.6), annaffy, GSEABase, rtracklayer Suggests: illuminaHumanv1.db, org.Hs.eg.db, SNPlocs.Hsapiens.dbSNP.20100427, rpart, rtracklayer, GSEABase, ceu1kg, ceuhm3, genefilter, hmyriB36 Enhances: multicore, Rsamtools License: Artistic-2.0 Package: girafe Version: 1.2.0 Depends: R (>= 2.10.0), methods, IRanges (>= 1.3.53), Rsamtools, ShortRead (>= 1.3.21), intervals (>= 0.13.1), genomeIntervals (>= 1.1.1), grid Imports: methods, Biobase, Biostrings, BSgenome, graphics, grDevices, stats, utils Suggests: MASS, org.Mm.eg.db, RColorBrewer Enhances: genomeIntervals License: Artistic-2.0 Package: GLAD Version: 2.12.0 Depends: R (>= 2.5.0) Suggests: aws, tcltk License: GPL Package: GlobalAncova Version: 3.18.0 Depends: methods, corpcor, globaltest Imports: annotate, AnnotationDbi Suggests: Biobase, annotate, GO.db, KEGG.db, golubEsets, hu6800.db, vsn, GSEABase License: GPL (>= 2) Package: globaltest Version: 5.4.0 Depends: methods Imports: Biobase (>= 2.5.5), survival, AnnotationDbi, annotate, multtest, graphics Suggests: vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, annotate, Biobase (>= 2.5.5), survival, GSEABase License: GPL (>= 2) Package: goProfiles Version: 1.12.0 Depends: Biobase, AnnotationDbi, GO.db Suggests: org.Hs.eg.db License: GPL Package: GOSemSim Version: 1.8.3 Depends: AnnotationDbi, GO.db, org.Hs.eg.db Suggests: org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Sco.eg.db, org.Ss.eg.db, org.Xl.eg.db License: GPL-2 Package: goseq Version: 1.2.1 Depends: R (>= 2.11.0), BiasedUrn, geneLenDataBase Imports: mgcv, graphics, stats, utils, AnnotationDbi Suggests: GO.db, edgeR, org.Hs.eg.db License: LGPL (>= 2) Package: GOstats Version: 2.16.0 Depends: Biobase (>= 1.15.29), Category (>= 2.3.26), graph Imports: AnnotationDbi (>= 0.0.89), Biobase (>= 1.15.29), Category (>= 2.3.26), GO.db (>= 1.13.0), RBGL, annotate (>= 1.13.2), graph (>= 1.15.15), methods, stats Suggests: hgu95av2.db (>= 1.13.0), ALL, GO.db (>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM License: Artistic-2.0 Package: goTools Version: 1.24.0 Depends: GO.db Suggests: hgu133a.db License: GPL-2 Package: gpls Version: 1.22.0 Imports: stats License: Artistic-2.0 Package: graph Version: 1.28.0 Depends: R (>= 2.6.0), methods Imports: methods, stats, tools, utils Suggests: SparseM (>= 0.36), XML, RBGL, RUnit License: Artistic-2.0 Package: GraphAlignment Version: 1.12.0 License: file LICENSE Package: GraphAT Version: 1.22.0 Depends: graph, methods Imports: graph, MCMCpack, methods, stats License: LGPL Package: GSEABase Version: 1.12.2 Depends: R (>= 2.6.0), Biobase, annotate, methods, graph Imports: annotate, AnnotationDbi, Biobase, graph, methods, XML Suggests: hgu95av2.db, GO.db, org.Hs.eg.db License: Artistic-2.0 Package: GSEAlm Version: 1.10.0 Depends: Biobase Suggests: GSEABase,Category, multtest, ALL, annotate, hgu95av2.db, genefilter, GOstats, RColorBrewer License: Artistic-2.0 Package: GSRI Version: 1.2.0 Depends: R (>= 2.10.0), fdrtool Imports: boot, graphics, stats, utils, genefilter License: GPL-3 Package: Harshlight Version: 1.20.0 Depends: R (>= 2.1.1) Imports: affy, altcdfenvs, Biobase, stats, utils License: GPL (>= 2) Package: Heatplus Version: 1.20.0 Imports: graphics, grDevices, stats License: GPL (>= 2) Package: HELP Version: 1.8.0 Depends: R (>= 2.8.0), stats, graphics, grDevices, Biobase, methods License: GPL (>= 2) Package: HEM Version: 1.22.0 Depends: R (>= 2.1.0) Imports: Biobase, grDevices, stats, utils License: GPL (>= 2) Package: hexbin Version: 1.24.1 Depends: R (>= 2.0.1), methods, grid, lattice Imports: methods, grid, lattice, graphics, grDevices, stats, utils Suggests: marray, affy, Biobase License: GPL-2 Package: HilbertVis Version: 1.8.0 Depends: R (>= 2.6.0), grid, lattice Suggests: EBImage, IRanges License: GPL (>= 3) Package: HilbertVisGUI Version: 1.8.0 Depends: R (>= 2.6.0), HilbertVis (>= 1.1.6) Suggests: lattice, IRanges License: GPL (>= 3) Package: hopach Version: 2.10.0 Depends: R (>= 2.11.0), cluster, Biobase, methods Imports: Biobase, cluster, graphics, grDevices, methods, stats, utils License: GPL (>= 2) Package: HTqPCR Version: 1.4.0 Depends: Biobase, RColorBrewer, limma Imports: affy, Biobase, gplots, graphics, grDevices, limma, methods, RColorBrewer, stats, utils Suggests: statmod License: Artistic-2.0 Package: HTSanalyzeR Version: 2.3.5 Depends: igraph, GSEABase, BioNet, cellHTS2, RankProd, methods Imports: graph, igraph, GSEABase, BioNet, cellHTS2, AnnotationDbi, biomaRt Suggests: KEGG.db, GO.db, org.Dm.eg.db, GOstats, org.Ce.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Hs.eg.db, snow License: Artistic-2.0 Package: hyperdraw Version: 1.2.0 Depends: R (>= 2.9.0), methods, grid, graph, hypergraph, Rgraphviz License: GPL (>= 2) Package: hypergraph Version: 1.22.0 Depends: R (>= 2.1.0), methods, graph License: Artistic-2.0 Package: Icens Version: 1.22.0 Depends: survival Imports: graphics License: Artistic-2.0 Package: iChip Version: 1.4.0 Depends: R (>= 2.10.0) Imports: limma License: GPL (>= 2) Package: idiogram Version: 1.26.0 Depends: R (>= 2.0.0), methods, Biobase, annotate, plotrix Suggests: hu6800.db, golubEsets License: GPL-2 Package: imageHTS Version: 1.0.0 Depends: R (>= 2.9.0), EBImage (>= 3.2.0), cellHTS2 (>= 2.10.0) Imports: tools, Biobase, hwriter, methods, vsn, stats, utils, e1071 License: LGPL-2.1 Package: impute Version: 1.24.0 Depends: R (>= 1.7.0) License: GPL-2 Package: IRanges Version: 1.8.9 Depends: R (>= 2.8.0), methods, utils, stats Imports: methods, utils, stats Suggests: RUnit License: Artistic-2.0 Package: iSeq Version: 1.0.0 Depends: R (>= 2.10.0) License: GPL (>= 2) Package: IsoGeneGUI Version: 1.2.1 Depends: tcltk, tkrplot, IsoGene Imports: multtest, relimp, WriteXLS,gdata, RColorBrewer, geneplotter Suggests: RUnit License: GPL-2 Package: ITALICS Version: 2.10.0 Depends: R (>= 2.0.0), GLAD, ITALICSData, oligo, affxparser, pd.mapping50k.xba240 Imports: affxparser, DBI, GLAD, oligo, oligoClasses, stats Suggests: pd.mapping50k.hind240, pd.mapping250k.sty, pd.mapping250k.nsp License: GPL Package: iterativeBMA Version: 1.8.0 Depends: BMA, leaps, Biobase (>= 2.5.5) License: GPL (>= 2) Package: iterativeBMAsurv Version: 1.8.0 Depends: BMA, leaps, survival, splines Imports: graphics, grDevices, stats, survival, utils License: GPL (>= 2) Package: KCsmart Version: 2.8.0 Depends: methods, siggenes, multtest Enhances: Biobase, CGHbase License: GPL-3 Package: KEGGgraph Version: 1.6.0 Depends: methods, XML (>= 2.3-0), graph, Rgraphviz (>= 1.22.0) Imports: methods, XML, graph Suggests: RBGL, KEGG.db, org.Hs.eg.db, hgu133plus2.db, SPIA License: GPL (>= 2) Package: keggorthology Version: 2.2.0 Depends: R (>= 2.5.0),stats,graph,hgu95av2.db Imports: AnnotationDbi,graph,DBI, graph, grDevices, methods, stats, tools, utils Suggests: RBGL,ALL License: Artistic-2.0 Package: KEGGSOAP Version: 1.24.0 Depends: methods Imports: XML, RCurl, SSOAP (>= 0.2-2) License: BSD Package: lapmix Version: 1.16.0 Depends: R (>= 2.6.0),stats Imports: Biobase, graphics, grDevices, methods, stats, tools, utils License: GPL (>= 2) Package: LBE Version: 1.18.0 Depends: stats Imports: graphics, grDevices, methods, stats, utils Suggests: qvalue License: GPL-2 Package: les Version: 1.0.0 Depends: R (>= 2.11.0), methods, graphics, fdrtool Imports: boot, gplots, GSRI (>= 1.1.7), RColorBrewer Suggests: Biobase, limma Enhances: multicore License: GPL-3 Package: limma Version: 3.6.9 Depends: R (>= 2.3.0), methods Suggests: affy, MASS, org.Hs.eg.db, splines, statmod (>= 1.2.2), vsn License: LGPL Package: limmaGUI Version: 1.26.0 Depends: limma, tcltk 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lumiHumanIDMapping, genefilter, RColorBrewer License: LGPL (>= 2) Package: LVSmiRNA Version: 1.0.0 Depends: Biobase,quantreg,splines,MASS,limma,affy,methods, SparseM, vsn Enhances: multicore,snow, Rmpi License: GPL-2 Package: maanova Version: 1.20.0 Depends: R (>= 2.7.0) Imports: Biobase, graphics, grDevices, methods, stats, utils Suggests: qvalue, snow Enhances: Rmpi License: GPL (>= 2) Package: macat Version: 1.24.0 Depends: Biobase, annotate Suggests: hgu95av2.db, stjudem License: Artistic-2.0 Package: maCorrPlot Version: 1.20.0 Depends: lattice Imports: graphics, grDevices, lattice, stats License: GPL (>= 2) Package: maDB Version: 1.22.0 Depends: R (>= 2.6.0), Biobase (>= 2.5.5), affy (>= 1.23.4), pgUtils (>= 1.5.0), limma (>= 1.8.0), methods Suggests: annaffy (>= 1.6.2), biomaRt (>= 1.8.2), geneplotter License: LGPL (>= 2) Package: made4 Version: 1.24.0 Depends: ade4, RColorBrewer,gplots,scatterplot3d Suggests: affy License: Artistic-2.0 Package: maigesPack Version: 1.14.0 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grDevices, methods, stats, utils License: GPL (>= 2) Package: MassSpecWavelet Version: 1.16.0 Depends: waveslim Suggests: xcms, caTools License: LGPL (>= 2) Package: MBCB Version: 1.4.0 Depends: R (>= 2.9.0), tcltk, tcltk2 Imports: preprocessCore, stats, utils License: GPL (>= 2) Package: mBPCR Version: 1.4.0 Depends: oligoClasses, SNPchip Imports: Biobase Suggests: xtable License: GPL (>= 2) Package: MCRestimate Version: 2.6.0 Depends: R (>= 2.7.2), golubEsets (>= 1.4.6) Imports: e1071 (>= 1.5-12), pamr (>= 1.22), randomForest (>= 3.9-6), RColorBrewer (>= 0.1-3), Biobase (>= 2.5.5), graphics, grDevices, stats, utils Suggests: xtable (>= 1.2-1), ROC (>= 1.8.0), genefilter (>= 1.12.0), gpls (>= 1.6.0) License: GPL (>= 2) Package: mdqc Version: 1.12.1 Depends: R (>= 2.2.1), cluster, MASS License: LGPL (>= 2) Package: MeasurementError.cor Version: 1.22.0 License: LGPL Package: MEDIPS Version: 1.0.0 Depends: R (>= 2.12.0), BSgenome Imports: Biostrings, BSgenome, graphics, gtools, IRanges, 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marray Imports: graphics, grDevices, marray, methods, nnet, stats License: LGPL Package: NTW Version: 1.0.0 Depends: R (>= 2.3.0) Imports: mvtnorm, stats, utils License: GPL-2 Package: nudge Version: 1.16.0 Imports: stats License: GPL Package: NuPoP Version: 1.0.0 License: GPL-2 Package: occugene Version: 1.10.0 Depends: R (>= 2.0.0) License: GPL (>= 2) Package: OCplus Version: 1.24.0 Depends: R (>= 2.1.0), akima Imports: multtest (>= 1.7.3), graphics, grDevices, stats License: LGPL Package: oligo Version: 1.14.0 Depends: R (>= 2.11.0), oligoClasses (>= 1.9.41) Imports: affyio (>= 1.15.2), affxparser (>= 1.17.3), Biobase (>= 2.7.3), DBI (>= 0.2-4), graphics, methods, preprocessCore (>= 1.9.0), splines, stats, utils LinkingTo: preprocessCore Suggests: hapmap100kxba, pd.mapping50k.xba240, pd.hg18.60mer.expr, maqcExpression4plex, genefilter, limma, RColorBrewer Enhances: ff, snow License: LGPL (>= 2) Package: oligoClasses Version: 1.12.2 Depends: Biobase (>= 2.7.3), methods Imports: graphics, Biostrings (>= 2.15.11), affyio (>= 1.15.2) Suggests: pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm, genomewidesnp5Crlmm Enhances: ff, snow License: GPL (>= 2) Package: OLIN Version: 1.28.0 Depends: R (>= 2.5.0), methods, locfit, marray Imports: graphics, grDevices, limma, marray, methods, stats Suggests: convert License: GPL-2 Package: OLINgui Version: 1.24.0 Depends: R (>= 2.0.0), OLIN (>= 1.4.0) Imports: graphics, marray, OLIN, tcltk, tkWidgets, widgetTools License: GPL-2 Package: oneChannelGUI Version: 1.16.5 Depends: Biobase, limma, affylmGUI, tkWidgets, GOstats, AnnotationDbi, preprocessCore, IRanges, edgeR, baySeq, girafe Suggests: annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy ,annaffy, affyPLM, multtest, ssize, sizepower, siggenes, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, metaArray, MergeMaid, biomaRt, 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methods, utils, IRanges, GenomicRanges, Biostrings LinkingTo: Biostrings, IRanges Suggests: ShortRead, GenomicFeatures, RUnit, KEGG.db License: Artistic-2.0 Package: rsbml Version: 2.8.0 Depends: R (>= 2.6.0), methods, utils Imports: graph, utils License: Artistic-2.0 Package: RTCA Version: 1.2.0 Depends: methods,stats,graphics,Biobase,RColorBrewer, gtools License: LGPL-3 Package: RTools4TB Version: 1.6.0 Depends: R (>= 2.5.1), Biobase, limma, methods Suggests: RColorBrewer, biocGraph, ALL License: LGPL Package: rtracklayer Version: 1.10.6 Depends: R (>= 2.7.0), methods, RCurl (>= 1.4-2) Imports: XML (>= 1.98-0), IRanges (>= 1.8.7), GenomicRanges (>= 1.1.34), Biostrings (>= 2.15.22), BSgenome (>= 1.15.17) LinkingTo: IRanges Suggests: humanStemCell, microRNA (>= 1.1.1), genefilter, limma, org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19 License: Artistic-2.0 Package: Rtreemix Version: 1.12.0 Depends: R (>= 2.5.0), methods, graph, Biobase Imports: methods, graph, Biobase, Hmisc Suggests: Rgraphviz License: LGPL Package: Ruuid Version: 1.28.0 Depends: R (>= 2.6.0), methods Imports: methods License: Artistic-2.0 Package: RWebServices Version: 1.14.0 Depends: SJava (>= 0.69-4), TypeInfo, methods, tools (>= 2.10.0), R (>= 2.5.0) Imports: RCurl License: file LICENSE Package: safe Version: 2.10.1 Depends: R (>= 2.4.0), Biobase, annotate, methods Imports: SparseM, GO.db, annotate, AnnotationDbi, survival, Biobase Suggests: GO.db, GOstats, Rgraphviz, multtest, hu6800.db, survival License: GPL (>= 2) Package: sagenhaft Version: 1.20.0 Depends: R (>= 2.5), SparseM (>= 0.73), methods Imports: graphics, methods, SparseM, stats, utils License: GPL (>= 2) Package: SAGx Version: 1.24.0 Depends: R (>= 2.5.0), stats, multtest, methods Imports: Biobase Suggests: KEGG.db, hu6800.db License: LGPL Package: SamSPECTRAL Version: 1.4.1 Depends: R (>= 2.0.0) Imports: methods License: GPL (>= 2) Package: SBMLR Version: 1.46.0 Depends: XML, odesolve License: GPL-2 Package: ScISI Version: 1.22.0 Depends: GO.db, RpsiXML, annotate, apComplex Imports: AnnotationDbi, GO.db, RpsiXML, annotate, methods, org.Sc.sgd.db, utils Suggests: ppiData, xtable License: LGPL Package: segmentSeq Version: 1.2.0 Depends: R (>= 2.3.0), methods, baySeq (>= 1.1.23), ShortRead Imports: baySeq, graphics, grDevices, IRanges, methods, utils Suggests: snow License: GPL-3 Package: seqLogo Version: 1.16.0 Depends: methods, grid License: LGPL (>= 2) Package: ShortRead Version: 1.8.2 Depends: methods, IRanges (>= 1.7.23), GenomicRanges, Biostrings (>= 2.13.52), lattice, Rsamtools Imports: IRanges, GenomicRanges, Biostrings, Biobase, hwriter, Rsamtools LinkingTo: IRanges, Biostrings Suggests: biomaRt, RUnit Enhances: Rmpi, multicore License: Artistic-2.0 Package: siggenes Version: 1.24.0 Depends: methods, multtest, Biobase, splines Suggests: affy, annotate, genefilter, KernSmooth, scrime (>= 1.1.2) License: LGPL (>= 2) Package: sigPathway Version: 1.18.0 Depends: R (>= 2.0.0) Suggests: hgu133a.db (>= 1.10.0), XML (>= 1.6-3), AnnotationDbi (>= 1.3.12) License: GPL-2 Package: SIM Version: 1.18.0 Depends: R (>= 2.4), quantreg Imports: graphics, stats, globaltest, quantsmooth Suggests: biomaRt License: GPL (>= 2) Package: simpleaffy Version: 2.26.1 Depends: R (>= 2.0.0), affy, genefilter, Biobase, methods, utils, gcrma Imports: affy, Biobase, gcrma, genefilter, graphics, grDevices, methods, stats, utils License: GPL (>= 2) Package: simulatorAPMS Version: 1.22.0 Depends: ScISI, apComplex Imports: ScISI License: LGPL Package: sizepower Version: 1.20.0 Depends: stats License: LGPL Package: SJava Version: 0.76.0 Depends: R (>= 2.10.0), methods License: GPL (>= 2) Package: SLGI Version: 1.10.0 Depends: R (>= 2.6.0), ScISI, lattice Imports: AnnotationDbi, Biobase, GO.db, ScISI, graphics, lattice, methods, stats Suggests: Biostrings, GO.db, org.Sc.sgd.db License: Artistic-2.0 Package: SLqPCR Version: 1.16.0 Depends: R(>= 2.4.0) Imports: stats Suggests: RColorBrewer License: GPL (>= 2) Package: SMAP Version: 1.14.0 Depends: methods License: GPL-2 Package: snapCGH Version: 1.20.0 Depends: limma, DNAcopy, methods Imports: aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils License: GPL Package: SNPchip Version: 1.14.0 Depends: R (>= 2.10.0), Biobase (>= 2.7.4), methods, oligoClasses (>= 1.9.52), graphics Imports: Biobase (>= 2.7.4), graphics, grDevices, methods, oligoClasses (>= 1.9.52), stats, utils Suggests: RSQLite, VanillaICE, RColorBrewer, genefilter, pd.mapping50k.xba240 License: LGPL (>= 2) Package: snpMatrix Version: 1.14.6 Depends: R(>= 2.3.0), survival, methods Imports: graphics, grDevices, methods, stats, survival, utils Suggests: hexbin Enhances: genetics License: GPL-3 Package: SpeCond Version: 1.4.0 Depends: R (>= 2.10.0), mclust (>= 3.3.1), Biobase (>= 1.15.13), fields, hwriter (>= 1.1), RColorBrewer, methods License: LGPL (>= 2) Package: SPIA Version: 1.8.0 Depends: R (>= 2.8.0), graphics Imports: graphics Suggests: graph, Rgraphviz, KEGGgraph License: GPL (>= 2) Package: spikeLI Version: 2.10.0 Imports: graphics, grDevices, stats, utils License: GPL Package: spkTools Version: 1.6.0 Depends: R (>= 2.7.0), Biobase (>= 2.5.5) Imports: Biobase (>= 2.5.5), graphics, grDevices, gtools, methods, RColorBrewer, stats, utils Suggests: xtable License: GPL (>= 2) Package: splicegear Version: 1.22.0 Depends: R (>= 2.6.0), methods, Biobase(>= 2.5.5) Imports: annotate, Biobase, graphics, grDevices, grid, methods, utils, XML License: LGPL Package: splots Version: 1.16.1 Imports: grid, RColorBrewer License: LGPL Package: spotSegmentation Version: 1.24.0 Depends: R (>= 1.7.0), mclust License: GPL (>= 2) Package: SQUADD Version: 1.0.0 Depends: R (>= 2.11.0) Imports: graphics, grDevices, methods, RColorBrewer, stats, utils License: GPL (>= 2) Package: SRAdb Version: 1.4.1 Depends: RSQLite (>= 0.8-4) , graph Imports: RCurl , GEOquery Suggests: Rgraphviz License: Artistic-2.0 Package: sscore Version: 1.22.0 Depends: R (>= 1.8.0), affy, affyio Suggests: affydata License: GPL (>= 2) Package: ssize Version: 1.24.0 Depends: gdata, xtable License: LGPL Package: SSPA Version: 1.6.0 Depends: R (>= 2.8), methods, qvalue Imports: graphics, limma, methods, stats Suggests: multtest, quadprog, splines License: GPL (>= 2) Package: Starr Version: 1.6.0 Depends: Ringo, affy, affxparser Imports: pspline, MASS License: Artistic-2.0 Package: stepNorm Version: 1.22.0 Depends: R (>= 1.8.0), marray, methods Imports: marray, MASS, methods, stats License: LGPL Package: TargetSearch Version: 1.6.0 Depends: R (>= 2.7.0), xcms, methods Imports: graphics, grDevices, methods, stats, tcltk, utils Suggests: TargetSearchData License: GPL (>= 2) Package: tigre Version: 1.4.2 Depends: R (>= 2.11.0), Biobase Imports: Biobase, methods, AnnotationDbi, gplots, graphics, puma, stats, utils, annotate, DBI, RSQLite Suggests: puma, drosgenome1.db, annotate License: AGPL-3 Package: tilingArray Version: 1.28.0 Depends: R (>= 2.11.0), Biobase, methods, pixmap Imports: strucchange, affy, vsn, genefilter, RColorBrewer, grid License: Artistic-2.0 Package: timecourse Version: 1.22.0 Depends: R (>= 2.1.1), MASS, methods Imports: Biobase, graphics, limma (>= 1.8.6), MASS, marray, methods, stats License: LGPL Package: tkWidgets Version: 1.28.0 Depends: R (>= 2.0.0), methods, widgetTools (>= 1.1.7), DynDoc (>= 1.3.0), tools Suggests: Biobase License: Artistic-2.0 Package: topGO Version: 2.2.0 Depends: R (>= 2.10.0), methods, graph (>= 1.14.0), Biobase (>= 2.0.0), GO.db (>= 2.3.0), AnnotationDbi (>= 1.7.19), SparseM (>= 0.73) Imports: methods, graph, Biobase, SparseM, AnnotationDbi, lattice Suggests: ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest, Rgraphviz, globaltest License: LGPL Package: tspair Version: 1.8.0 Depends: R (>= 2.2.1), Biobase (>= 2.4.0), time License: GPL Package: twilight Version: 1.26.0 Depends: R (>= 2.1.0), splines (>= 2.2.0), stats (>= 2.2.0), Biobase(>= 1.12.0) Imports: Biobase, graphics, grDevices, stats Suggests: golubEsets (>= 1.4.2), vsn (>= 1.7.2) License: GPL (>= 2) Package: TypeInfo Version: 1.16.0 Depends: methods License: BSD Package: VanillaICE Version: 1.12.4 Depends: R (>= 2.10.0), crlmm (>= 1.5.44), IRanges, oligoClasses (>= 1.9.53), methods Imports: SNPchip (>= 1.11.2), stats Suggests: genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter, RSQLite License: LGPL-2 Package: vbmp Version: 1.18.0 Depends: R (>= 2.5) Suggests: Biobase (>= 2.5.5), statmod License: GPL (>= 2) Package: vsn Version: 3.18.0 Depends: Biobase (>= 2.5.5) Imports: methods, affy (>= 1.23.4), limma, lattice Suggests: affydata, hgu95av2cdf License: Artistic-2.0 Package: weaver Version: 1.16.0 Depends: R (>= 2.5.0), digest, tools, utils, codetools Suggests: codetools License: GPL-2 Package: webbioc Version: 1.22.0 Depends: R (>= 1.8.0), Biobase, affy, multtest, annaffy, vsn, gcrma, qvalue Imports: Biobase, multtest, qvalue, stats, utils License: GPL (>= 2) Package: widgetTools Version: 1.28.0 Depends: R (>= 2.4.0), methods, utils, tcltk Suggests: Biobase License: LGPL Package: xcms Version: 1.24.1 Depends: R (>= 1.9.0), methods Suggests: faahKO, msdata, multtest, ncdf, rgl, MassSpecWavelet (>= 1.5.2), RANN, snow, KEGGSOAP Enhances: Rgraphviz, XML License: GPL (>= 2) Package: XDE Version: 1.10.0 Depends: R (>= 2.9.0), Biobase (>= 2.5.5), methods, graphics Imports: Biobase, genefilter, graphics, grDevices, gtools, MergeMaid, methods, stats, utils Suggests: siggenes, genefilter, MASS, RColorBrewer, GeneMeta License: LGPL-2 Package: xmapbridge Version: 1.8.1 Depends: R (>= 2.0), methods License: LGPL-3 Package: xmapcore Version: 1.4.1 Depends: R (>= 2.8.0), methods, IRanges Imports: DBI, RMySQL (>= 0.6-0), digest Suggests: RUnit License: GPL-2 Package: xps Version: 1.10.2 Depends: R (>= 2.6.0), methods License: GPL (>= 2.0) Package: yaqcaffy Version: 1.10.1 Depends: simpleaffy (>= 2.19.3), methods Imports: simpleaffy, methods Suggests: MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk License: Artistic-2.0