# miRBase: the microRNA database

## Documentation for package ‘mirbase.db’ version 0.4.0

- DESCRIPTION file.

## Help Pages

contextNumber | Class "mirnaContext"
contextNumber-method | Class "mirnaContext"
contextOverlapSense | Class "mirnaContext"
contextOverlapSense-method | Class "mirnaContext"
contextOverlapType | Class "mirnaContext"
contextOverlapType-method | Class "mirnaContext"
contextTranscriptID | Class "mirnaContext"
contextTranscriptID-method | Class "mirnaContext"
contextTranscriptName | Class "mirnaContext"
contextTranscriptName-method | Class "mirnaContext"
contextTranscriptSource | Class "mirnaContext"
contextTranscriptSource-method | Class "mirnaContext"
linksDbId | Class "mirnaLinks"
linksDbId-method | Class "mirnaLinks"
linksDbLink | Class "mirnaLinks"
linksDbLink-method | Class "mirnaLinks"
linksDbSecondary | Class "mirnaLinks"
linksDbSecondary-method | Class "mirnaLinks"
matureAccession | Class "mirnaMature"
matureAccession-method | Class "mirnaMature"
matureEvidence | Class "mirnaMature"
matureEvidence-method | Class "mirnaMature"
matureExperiment | Class "mirnaMature"
matureExperiment-method | Class "mirnaMature"
matureFrom | Class "mirnaMature"
matureFrom-method | Class "mirnaMature"
matureName | Class "mirnaMature"
matureName-method | Class "mirnaMature"
matureSimilarity | Class "mirnaMature"
matureSimilarity-method | Class "mirnaMature"
matureTo | Class "mirnaMature"
matureTo-method | Class "mirnaMature"
mirbase | Bioconductor Custom Annotation Data Package
mirbase.db | Bioconductor Custom Annotation Data Package
mirbaseACC2ID | MicroRNA IDs to Accessions
mirbaseCHR | MicroRNA IDs to Chromosomes
mirbaseCHRLOC | MicroRNA IDs to Chromosomal Location
mirbaseCHRLOCEND | MicroRNA IDs to Chromosomal Location
mirbaseCLUSTER | MicroRNA IDs to Clusters
mirbaseCOMMENT | MicroRNA IDs to Comments
mirbaseCONTEXT | MicroRNA IDs to Genomic Context
mirbaseContextBimap | Class "mirnaContext"
mirbaseContextBimap-class | Class "mirnaContext"
mirbaseDESCRIPTION | MicroRNA IDs to Descriptions
mirbaseFAMILY | MicroRNA IDs to Family
mirbaseHAIRPIN | MicroRNA IDs to Hairpin
mirbaseID2ACC | MicroRNA IDs to Accessions
mirbaseID2SPECIES | MicroRNA IDs to Species
mirbaseLINKS | MicroRNA IDs to External Database Links
mirbaseLinksBimap | Class "mirnaLinks"
mirbaseLinksBimap-class | Class "mirnaLinks"
mirbaseMAPCOUNTS | Number of mapped keys for the maps in package mirbase.db
mirbaseMATURE | MicroRNA IDs to Mature MicroRNAs
mirbaseMatureBimap | Class "mirnaMature"
mirbaseMatureBimap-class | Class "mirnaMature"
mirbaseMFE | MicroRNA IDs to Minimum Fold Energy
mirbasePMID | MicroRNA IDs to References
mirbasePmidBimap | Class "mirnaPmid"
mirbasePmidBimap-class | Class "mirnaPmid"
mirbaseSEQUENCE | MicroRNA IDs to Sequence
mirbaseSPECIES | Organism Acronym to Species
mirbaseSPECIES2ID | MicroRNA IDs to Species
mirbase_dbconn | Collect information about the package annotation DB
mirbase_dbfile | Collect information about the package annotation DB
mirbase_dbInfo | Collect information about the package annotation DB
mirbase_dbschema | Collect information about the package annotation DB
mirnaContext | Class "mirnaContext"
mirnaContext-class | Class "mirnaContext"
mirnaLinks | Class "mirnaLinks"
mirnaLinks-class | Class "mirnaLinks"
mirnaMature | Class "mirnaMature"
mirnaMature-class | Class "mirnaMature"
mirnaPmid | Class "mirnaPmid"
mirnaPmid-class | Class "mirnaPmid"
pmidAuthor | Class "mirnaPmid"
pmidAuthor-method | Class "mirnaPmid"
pmidJournal | Class "mirnaPmid"
pmidJournal-method | Class "mirnaPmid"
pmidMedline | Class "mirnaPmid"
pmidMedline-method | Class "mirnaPmid"
pmidOrderAdded | Class "mirnaPmid"
pmidOrderAdded-method | Class "mirnaPmid"
pmidTitle | Class "mirnaPmid"
pmidTitle-method | Class "mirnaPmid"
show-method | Class "mirnaContext"
show-method | Class "mirnaLinks"
show-method | Class "mirnaMature"
show-method | Class "mirnaPmid"