pedigree {SeqVarTools} | R Documentation |
Pedigree for example data files in SeqArray.
pedigree
A data.frame with the following columns.
family
Family ID
individ
Individual ID
father
Father ID
mother
Mother ID
sex
Sex
sample.id
sample.id in VCF/GDS files
There is one trio in the pedigree.
HapMap
data(pedigree) head(pedigree) gds <- seqOpen(seqExampleFileName("gds")) setdiff(seqGetData(gds, "sample.id"), pedigree$sample.id) seqClose(gds)