ggtree {ggtree} | R Documentation |
ggtree
provides functions for visualizing phylogenetic tree and its associated data in R.visualizing phylogenetic tree and heterogenous associated data based on grammar of graphics
ggtree
provides functions for visualizing phylogenetic tree and its associated data in R.
drawing phylogenetic tree from phylo object
ggtree(tr, mapping = NULL, layout = "rectangular", open.angle = 0, mrsd = NULL, as.Date = FALSE, yscale = "none", yscale_mapping = NULL, ladderize = TRUE, right = FALSE, branch.length = "branch.length", ndigits = NULL, ...)
tr |
phylo object |
mapping |
aes mapping |
layout |
one of 'rectangular', 'slanted', 'fan', 'circular', 'radial', 'equal_angle' or 'daylight' |
open.angle |
open angle, only for 'fan' layout |
mrsd |
most recent sampling date |
as.Date |
logical whether using Date class in time tree |
yscale |
y scale |
yscale_mapping |
yscale mapping for category variable |
ladderize |
logical |
right |
logical |
branch.length |
variable for scaling branch, if 'none' draw cladogram |
ndigits |
number of digits to round numerical annotation variable |
... |
additional parameter |
tree
Yu Guangchuang
require(ape) tr <- rtree(10) ggtree(tr)