metavizControl {metavizr} | R Documentation |
Default settings for the various plotting functions in metavizr.
metavizControl(aggregateAtDepth = 3, aggregateFun = function(x) colSums(x), valuesAnnotationFuns = NULL, maxDepth = 4, maxHistory = 3, maxValue = NULL, minValue = NULL, title = "", n = 10000, rankFun = stats::sd, norm = TRUE, log = FALSE, featureSelection = NULL)
aggregateAtDepth |
Level of the tree to aggregate counts at by default. |
aggregateFun |
Function to aggregate counts by at the aggregateAtDepth level. |
valuesAnnotationFuns |
Function for error bars. |
maxDepth |
Level of the tree to display by default in icicle view. |
maxHistory |
Value for caching. |
maxValue |
Maximum value to display. |
minValue |
Minimum value to display. |
title |
title. |
n |
Number of OTUs to include in ranking. |
rankFun |
Ranking function - single vector function. |
norm |
Normalize MRexperiment object. |
log |
Log tranformation of MRexperiment object. |
featureSelection |
List of features to set as nodeSelections |
List of setting parameters.
settings = metavizControl()