gene_id_type {scPipe} | R Documentation |
gene_id_type
from a SingleCellExperiment objectGet or set gene_id_type
from a SingleCellExperiment object
gene_id_type(object) gene_id_type(object) <- value gene_id_type.sce(object) ## S4 method for signature 'SingleCellExperiment' gene_id_type(object) ## S4 replacement method for signature 'SingleCellExperiment' gene_id_type(object) <- value
object |
A |
value |
Value to be assigned to corresponding object. |
the gene id type used by Biomart
gene id type string
Luyi Tian
data("sc_sample_data") data("sc_sample_qc") sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data))) organism(sce) = "mmusculus_gene_ensembl" gene_id_type(sce) = "ensembl_gene_id" QC_metrics(sce) = sc_sample_qc demultiplex_info(sce) = cell_barcode_matching UMI_dup_info(sce) = UMI_duplication gene_id_type(sce)