UMI_dup_info {scPipe} | R Documentation |
Get or set UMI duplication results in a SingleCellExperiment object
UMI_dup_info(object) UMI_dup_info(object) <- value UMI_dup_info.sce(object) ## S4 method for signature 'SingleCellExperiment' UMI_dup_info(object) ## S4 replacement method for signature 'SingleCellExperiment' UMI_dup_info(object) <- value
object |
A |
value |
Value to be assigned to corresponding object. |
a dataframe of cell UMI duplication information
A DataFrame of UMI duplication results.
Luyi Tian
data("sc_sample_data") data("sc_sample_qc") sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data))) organism(sce) = "mmusculus_gene_ensembl" gene_id_type(sce) = "ensembl_gene_id" QC_metrics(sce) = sc_sample_qc demultiplex_info(sce) = cell_barcode_matching UMI_dup_info(sce) = UMI_duplication head(UMI_dup_info(sce))