calculateFPKM {scater} | R Documentation |
Calculate fragments per kilobase of exon per million reads mapped (FPKM) values for expression from counts for a set of features.
calculateFPKM(object, effective_length, use.size.factors = TRUE)
object |
an |
effective_length |
vector of class |
use.size.factors |
a logical scalar, see |
Matrix of FPKM values.
data("sc_example_counts") data("sc_example_cell_info") example_sce <- SingleCellExperiment( assays = list(counts = sc_example_counts), colData = sc_example_cell_info) effective_length <- rep(1000, 2000) fpkm(example_sce) <- calculateFPKM(example_sce, effective_length, use.size.factors = FALSE)