gQTLstats-package	gQTLstats-package
AllAssoc	cisAssoc
cisAssoc	cisAssoc
cisCount	cisAssoc
cisEsts	cisAssoc
clipPCs	clipPCs
clipPCs,RangedSummarizedExperiment,numeric,logical-method	clipPCs
clipPCs,RangedSummarizedExperiment,numeric,missing-method	clipPCs
clipPCs,SummarizedExperiment,numeric,logical-method	clipPCs
clipPCs,SummarizedExperiment,numeric,missing-method	clipPCs
collapse_multiPerm	cisAssoc
describe	TransStore-class
describe,TransStore-method	TransStore-class
directPlot	directPlot
distToGene	cisAssoc
enumerateByFDR	enumerateByFDR
eqBox2	eqBox2
eqBox3	eqBox2
eqDesc2	eqBox2
FDRsupp-class	FDRsupp-class
filteredDFwPerm	gQTLstats-package
filtFDR	filtFDR
getFDRfunc	FDRsupp-class
getFDRfunc,FDRsupp-method	FDRsupp-class
getTab	FDRsupp-class
getTab,FDRsupp-method	FDRsupp-class
getTransRegistries	tsByRank
gQTLs	gQTLs
gQTLstats	gQTLstats-package
gQTLswarm	gQTLs
hmm878	hmm878
manhWngr	manhWngr
mixedVCFtoSnpMatrix	mixedVCFtoSnpMatrix
pifdr	pifdr
pifdr2	pifdr
pifdr3	pifdr
plot	senstab
plot.senstab	senstab
prep.cisAssocNB	gQTLstats-package
qqStore	qqStore
queryVCF	queryVCF
rawFDR	filtFDR
regressOut	clipPCs
sensByProbe	senstab
senstab	senstab
setFDRfunc	setFDRfunc
storeToFDR	storeToStats
storeToFDRByProbe	storeToStats
storeToHist	storeToStats
storeToMaxAssocBySNP	gQTLstats-package
storeToQuantiles	storeToStats
table_sensobj_thresh	gQTLstats-package
tqbrowser	tqbrowser
transAssoc	transAssoc
transBrowse	transBrowse
transBrowse2	transBrowse
TransChunk	gQTLstats-package
TransChunk-class	gQTLstats-package
TransStore	TransStore
TransStore-class	TransStore-class
transTable	gQTLstats-package
tsByRank	tsByRank
tsByRankAccum	tsByRank
tsByRankAccum_sing	tsByRank
tsByRank_sing	tsByRank
tsIndex.reg	TransStore
txsPlot	txsPlot
