Package: genphen
Type: Package
Title: A tool for quantification of associations between genotypes and
        phenotypes in genome wide association studies (GWAS) with
        Bayesian inference and statistical learning
Version: 1.10.3
Date: 2019-03-10
Author: Simo Kitanovski
Maintainer: Simo Kitanovski <simo.kitanovski@uni-due.de>
Description: Genetic association studies are an essential tool for studying the 
    relationship between genotypes and phenotypes. With genphen we can jointly
    study multiple phenotypes of different types, by quantifying the association 
    between different genotypes and each phenotype using a hybrid method which 
    uses statistical learning techniques such as random forest and support 
    vector machines, and Bayesian inference using hierarchical models. 
License: GPL (>= 2)
Depends: R (>= 3.5.0), Rcpp (>= 0.12.17), methods, stats, graphics
Imports: rstan (>= 2.17.3), rstantools (>= 1.5.0), ranger, parallel,
        foreach, doParallel, e1071, Biostrings
LinkingTo: StanHeaders (>= 2.17.2), rstan (>= 2.17.3), BH (>=
        1.66.0-1), Rcpp (>= 0.12.17), RcppEigen (>= 0.3.3.4.0)
Suggests: testthat
LazyLoad: yes
ByteCompile: true
NeedsCompilation: yes
SystemRequirements: GNU make
Encoding: UTF-8
biocViews: GenomeWideAssociation, Regression, Classification,
        SupportVectorMachine, Genetics, SequenceMatching, Bayesian,
        FeatureExtraction, Sequencing
git_url: https://git.bioconductor.org/packages/genphen
git_branch: RELEASE_3_8
git_last_commit: 4224c97
git_last_commit_date: 2019-03-11
Date/Publication: 2019-03-11
Packaged: 2019-03-12 01:13:19 UTC; biocbuild
Built: R 3.5.2; x86_64-apple-darwin15.6.0; 2019-03-12 08:21:21 UTC; unix
