# A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning

## Documentation for package ‘genphen’ version 1.10.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

dichotomous.phenotype.saap | Dichotomous phenotype dataset
genotype.saap | SAAP genotype dataset
genotype.saap.msa | SAAP genotype dataset (msa)
genotype.snp | SNP genotype dataset
genotype.snp.msa | SNP genotype dataset (msa)
phenotype.saap | Continuous phenotype dataset
phenotype.snp | Continuous phenotype dataset
runDiagnostics | Data reduction procedure
runGenphen | Genetic association analysis using Bayesian inference and statistical learning methods
runPhyloBiasCheck | Check for phylogenetic bias