Recon2 {BiGGR} | R Documentation

## Human metabolic reconstruction Recon2

### Description

The dataset was generated by downloading the SBML file of the reconstruction (http://www.ebi.ac.uk/biomodels-main/MODEL1109130000) which was subsequently converted into an object of class `SBML` using the `rsbml_read` function from the `rsbml` package.

### Usage

    data(Recon2)

### Format

An sbml object of class rsbml

### Source

http://www.ebi.ac.uk/biomodels-main/MODEL1109130000

### References

Thiele I, Swainston N, et al.,"A community-driven global reconstruction of human metabolism", Nature Biotechnology 31, 419-425 (2013), doi:10.1038/nbt.2488

### Examples

    ## Not run:
    ##The dataset was generated as follows:
    ##MODEL1109130000.xml was downloaded from http://www.ebi.ac.uk/biomodels-main/MODEL1109130000
    ##Recon2 <- rsbml_read("MODEL1109130000.xml")

    ## End(Not run)

    ##load data and get all reaction IDs
    data(Recon2)
    model <- Recon2@model
    ##get all reaction identifiers
    sapply(model@reactions, id)

[Package BiGGR version 1.18.0 Index]