scoreNodes {BioNet} | R Documentation

## Score the nodes of a network

### Description

The function derives scores from the p-values of the nodes of a network.

### Usage

    scoreNodes(network, fb, fdr=0.05)

### Arguments

`network` | A network in graphNEL or igraph format.
`fb` | Fitted bum model.
`fdr` | False discovery rate.

### Value

Ordered score vector for the nodes of the network.

### Author(s)

Marcus Dittrich

### See Also

`bumOptim`, `fitBumModel`

### Examples

    library(DLBCL)
    # load p-values
    data(dataLym)
    # load graph
    data(interactome)
    # get induced subnetwork for all genes contained on the chip
    chipGraph <- subNetwork(dataLym$label, interactome)
    p.values <- dataLym$t.pval
    names(p.values) <- dataLym$label
    bum <- fitBumModel(p.values, plot=TRUE)
    scoreNodes(network=chipGraph, fb=bum, fdr=0.001)

[Package BioNet version 1.42.0 Index]