mc3toGR {BiocOncoTK} | R Documentation

## create a GRanges from the MC3 mutation data

### Description

create a GRanges from the MC3 mutation data

### Usage

    mc3toGR(bq, basicfilt = function(data) dplyr::filter(data, Consequence ==
      "non_coding_transcript_exon_variant"), maxnrec = 1e+05)

### Arguments

`bq` | bigrquery BigQueryConnection instance
`basicfilt` | a dplyr::filter instance or NULL to convert entire MAF
`maxnrec` | numeric(1) used with dplyr::as.data.frame en route to GRanges

### Value

a GRanges instance

### Examples

    mc3toGR

[Package BiocOncoTK version 1.2.1 Index]