btpredict {BubbleTree} | R Documentation

## btpredict

### Description

btpredict

### Usage

    btpredict(.Object)

    ## S4 method for signature 'BTreePredictor'
    btpredict(.Object)

### Arguments

`.Object` | the object

### Value

.Object populated with the predictions

### Examples

    load(system.file("data", "allRBD.lst.RData", package="BubbleTree"))

    btreepredictor <- new("BTreePredictor")
    btreepredictor@config$cutree.h <- 0.15
    high.ploidy <- rep(TRUE, length(allRBD.lst))
    high.purity <- rep(TRUE, length(allRBD.lst))

    high.ploidy[c("sam6",
                  "ovary.wgs",
                  "ovary.wes",
                  "TCGA-06-0145-01A-01W-0224-08",
                  "TCGA-13-1500-01A-01D-0472-01",
                  "TCGA-AO-A0JJ-01A-11W-A071-09")] <- FALSE

    high.purity[c("sam6", "ovary.wgs", "ovary.wes")] <- FALSE

    rbd <- allRBD.lst[["sam6"]]
    btreepredictor@config$high.ploidy <- high.ploidy["sam6"]
    btreepredictor@config$high.purity <- high.purity["sam6"]
    btreepredictor <- loadRBD(btreepredictor, rbd)
    btreepredictor@config$min.segSize <- ifelse(max(btreepredictor@rbd$seg.size,
                                                    na.rm=TRUE) < 0.4, 0.1, 0.4)
    btreepredictor <- btpredict(btreepredictor)
    cat(info(btreepredictor), "\n")

[Package BubbleTree version 2.12.0 Index]