# BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

## Documentation for package ‘BubbleTree’ version 2.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

Annotate-package | Annotate
BTreePlotter-package | BTreePlotter
BTreePredictor-package | BTreePredictor
RBD-package | RBD
TrackPlotter-package | TrackPlotter
all.somatic.lst | all.somatic.lst
allCall.lst | allCall.lst
allCNV.lst | allCNV.lst
allHetero.lst | allHetero.lst
allRBD.lst | allRBD.lst
annoByGenesAndCyto | annoByGenesAndCyto
annoByGenesAndCyto-method | annoByGenesAndCyto
Annotate | Annotate
bafTrack | bafTrack
bafTrack-method | bafTrack
btcompare | btcompare
btpredict | btpredict
btpredict-method | btpredict
BTreePlotter | BTreePlotter
BTreePredictor | BTreePredictor
cancer.genes.minus2 | cancer.genes.minus2.rda
centromere.dat | centromere.dat
cnv.gr | cnv.gr
cyto.gr | cyto.gr
drawBTree | drawBTree
drawBTree-method | drawBTree
drawBubbles | drawBubbles
drawBubbles-method | drawBubbles
drawFeatures | drawFeatures
drawFeatures-method | drawFeatures
gene.uni.clean.gr | gene.uni.clean.gr
getTracks | getTracks
heteroLociTrack | heteroLociTrack
heteroLociTrack-method | heteroLociTrack
hg19.seqinfo | hg19.seqinfo.Rd
info | info
info-method | info
loadRBD | loadRBD
loadRBD-method | loadRBD
makeRBD | makeRBD
makeRBD-method | makeRBD
mergeSnpCnv | mergeSnpCnv
mergeSnpCnv-method | mergeSnpCnv
RBD | RBD
RscoreTrack | RscoreTrack
RscoreTrack-method | RscoreTrack
saveXLS | saveXLS
snp.gr | snp.gr
trackBTree | trackBTree
trackBTree-method | trackBTree
TrackPlotter | TrackPlotter
vol.genes | vol.genes
xyTrack | xyTrack
xyTrack-method | xyTrack