bafTrack {BubbleTree} | R Documentation

## bafTrack

### Description

get the BAF track

### Usage

    bafTrack(.Object, result.dat, gr2, somatic.gr = NULL, min.prev = 0.15,
      cex = 1.2)

    ## S4 method for signature 'TrackPlotter'
    bafTrack(.Object, result.dat, gr2, somatic.gr = NULL,
      min.prev = 0.15, cex = 1.2)

### Arguments

`.Object` | the object
`result.dat` | the result dataframe
`gr2` | the gr2 object
`somatic.gr` | somatic gr object annotation
`min.prev` | previous min
`cex` | the cex

### Value

the highlighted BAF track

### Examples

    load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
    load(system.file("data", "centromere.dat.rda", package="BubbleTree"))
    load(system.file("data", "all.somatic.lst.RData", package="BubbleTree"))
    load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree"))

    trackplotter <- new("TrackPlotter")
    gr2 = centromere.dat
    nn <- "sam2"
    p2 <- bafTrack(trackplotter,
                   result.dat=allCall.lst[[nn]]@result,
                   gr2=gr2,
                   somatic.gr=all.somatic.lst[[nn]])

[Package BubbleTree version 2.12.0 Index]