rawPlot {CAFE} | R Documentation

## Plot without any smoother

### Description

Makes chromosome plot using raw data values

### Usage

    rawPlot(datalist,samples=c(1,2),chromNum=1,idiogram=FALSE,file="default")

### Arguments

`datalist` | The CAFE datalist to be analyzed, i.e. the output of `ProcessCels`.
`samples` | A vector or sample numbers to be plotted
`chromNum` | The chromosome to be analyzed
`idiogram` | If `TRUE`, will plot a chromosome idiogram over the plot
`file` | Specify a file name to store output png file

### Value

Plot to file system; Returns a ggplot2 graph if `chromNum!="ALL"`. When `chromNum=="ALL"`, returns a list of ggplot2 graphs.

### Author(s)

Sander Bollen

### See Also

`slidPlot` `facetPlot` `discontPlot`

### Examples

    data("CAFE_data")
    rawPlot(CAFE_data,samples=8,chromNum=17)

[Package CAFE version 1.18.0 Index]