GeneExpSE {CAGEr} | R Documentation

## Retreives the SummarizedExperiment containing gene expression levels.

### Description

Get or set a `SummarizedExperiment` using the gene expression data in the experiment slot `geneExpMatrix` and the sample metadata of the `CAGEexp` object.

### Usage

    GeneExpSE(object)

    ## S4 method for signature 'CAGEset'
    GeneExpSE(object)

    ## S4 method for signature 'CAGEexp'
    GeneExpSE(object)

### Arguments

`object` | A `CAGEexp` object.

### Author(s)

Charles Plessy

### See Also

Other CAGEr accessor methods: `CTSSclusteringMethod`, `CTSScoordinates`, `CTSScumulativesTagClusters`, `CTSSnormalizedTpm`, `CTSStagCountTable`, `CTSStagCount`, `GeneExpDESeq2`, `consensusClustersGR`, `genomeName`, `inputFilesType`, `inputFiles`, `librarySizes`, `sampleLabels`, `seqNameTotalsSE`, `tagClusters`

### Examples

    GeneExpSE(exampleCAGEexp)

[Package CAGEr version 1.24.0 Index]