spike {CALIB} | R Documentation

## Experiment Data: SpikeList Example

### Description

This `SpikeList` object contains all the spikes in dataset

`RG`.It is generated by the function
`read.spike` from `RG` and user-specified concentraion file in the CALIB package.

### Usage

    data(spike)

### Format

`spike` is an `SpikeList` object containing the following list components: \$R,\$G,\$Rb,\$Gb,
\$RArea,\$GArea,\$RConc,\$GConc and \$genes. It represents two microarrays and 600 spikes, including 480 calibration controls, 96 ratio controls and 24 negative controls.

### Source

For the source information, see the introduction of dataset `RG`.

### References

dataset `RG`.

Engelen, K., Naudts, B., DeMoor, B., Marchal, K. (2006) A calibration method for estimating absolute expression levels from microarray data. Bioinformatics 22: 1251-1258.

Hilson,P.,et al. (2004) Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res. 14, 2176-2189.

### Examples

    data(spike)

    plotSpikeRG(spike,array=1)

[Package CALIB version 1.48.0 Index]