stat_overlap_mods {CEMiTool} | R Documentation

## Calculate module overlap statistics

### Description

Calculate module overlap statistics

### Usage

    stat_overlap_mods(analyses, comp_group, subject_col = NULL, ...)

### Arguments

`analyses` | List of `CEMiTool` objects
`comp_group` | Character string indicating the group to be compared against
`subject_col` | Optional character string indicating a column in the `CEMiTool` objects' sample annotation slot object containing subject information
`...` | Additional parameters

### Value

A list containing overlap statistics, node and study information and module activity

### Examples

    ## Not run:
    # Run the cemitool function twice on expr dataset. Each time, one sample will be removed
    data(expr0)
    set.seed(10)
    dset1 <- expr0[,-sample(1:ncol(expr0), 1)]
    dset2 <- expr0[,-sample(1:ncol(expr0), 1)]
    cem1 <- cemitool(dset1, sample_annot, plot=FALSE)
    cem2 <- cemitool(dset2, sample_annot, plot=FALSE)
    mod_stats <- stat_overlap_mods(analyses=list(cem1, cem2), comp_group="g0")

    ## End(Not run)

[Package CEMiTool version 1.6.11 Index]