plot_comembership {CEMiTool} | R Documentation

## Plot module edge co-membership

### Description

Plot module edge co-membership

### Usage

    plot_comembership(cem_overlap_df)

### Arguments

`cem_overlap_df` | Output of function `cem_overlap`

### Value

A plot containing the number of edges present in each fraction of studies

### Examples

    ## Not run:
    # Run the cemitool function five times on expr0 dataset. Each time, 10 samples will be removed.
    data(expr0)
    data(sample_annot)
    set.seed(10)
    dset1 <- expr0[,-sample(1:ncol(expr0), 10)]
    set.seed(11)
    dset2 <- expr0[,-sample(1:ncol(expr0), 10)]
    set.seed(12)
    dset3 <- expr0[,-sample(1:ncol(expr0), 10)]
    set.seed(13)
    dset4 <- expr0[,-sample(1:ncol(expr0), 10)]
    set.seed(14)
    dset5 <- expr0[,-sample(1:ncol(expr0), 10)]

    cem1 <- cemitool(dset1, sample_annot, plot=FALSE)
    cem2 <- cemitool(dset2, sample_annot, plot=FALSE)
    cem3 <- cemitool(dset3, sample_annot, plot=FALSE)
    cem4 <- cemitool(dset4, sample_annot, plot=FALSE)
    cem5 <- cemitool(dset5, sample_annot, plot=FALSE)

    cem_overlap_df <- cem_overlap(list(cem1, cem2, cem3, cem4, cem5))
    plot_comembership(cem_overlap_df)

    ## End(Not run)

[Package CEMiTool version 1.6.11 Index]