plotPolymorphicRegion {CNVrd2} | R Documentation

## Plot polymorphic regions.

### Description

Plot polymorphic regions based on coordinates set by users.

### Usage

    plotPolymorphicRegion(Object, ...)

### Arguments

`Object` | An object of class CNVrd2
`...` | `polymorphicRegionObject`An object obtained from the process of identifying poplymorphic regions. Optional arguments.

### Value

`putativeBoundary` | Putative boundaries of polymorphic regions based on quantile values.

### Note

Users can choose various quantile values and adjust different thresholds to obtain polymorphic regions.

### Author(s)

Hoang Tan Nguyen, Tony R Merriman and MA Black. hoangtannguyenvn@gmail.com

### See Also

`identifyPolymorphicRegion`

### Examples

    ## Not run:

    plotPolymorphicRegion(Object = objectCNVrd2, polymorphicRegionObject = fcgr3PolymorphicRegion,
                          xlim = c(161300000, 161800000), drawThresholds = TRUE,
                          thresholdForPolymorphicRegions = c(0.75, 0.25))

    ##Change thresholds
    plotPolymorphicRegion(Object = objectCNVrd2, polymorphicRegionObject = fcgr3PolymorphicRegion,
                          xlim = c(161300000, 161800000), drawThresholds = TRUE,
                          thresholdForPolymorphicRegions = c(0.9, 0.1))

    ##Plot standard deviation

    plotPolymorphicRegion(Object = objectCNVrd2, polymorphicRegionObject = fcgr3PolymorphicRegion,
                          xlim = c(161300000, 161800000), typePlot = "SD",
                          thresholdForPolymorphicRegions = c(0.75, 0.25))

    ## End(Not run)

[Package CNVrd2 version 1.20.0 Index]