plotImages {CONFESS} | R Documentation

## plotImages

### Description

It generates the plotted results.

### Usage

    plotImages(number, origImg, chaImgs, binChaImgs, stats, pix, log.transform,
      minDiff, sample, image.type)

### Arguments

`number` | Integer. An index number that regulates the fluorescence estimation procedure.
`origImg` | Data matrix. The original BF image to be read and processed.
`chaImgs` | List. A list of the channel images (data matrices) of a sample.
`binChaImgs` | List. A list of binary segmented channel image data.
`stats` | List. A series of foreground and background statistics.
`pix` | List. A list of bright spot coordinates in the channels.
`log.transform` | Logical. If TRUE the image data are plotted in the log scale.
`minDiff` | Float. the mu_hat of the H0: image-to-noise ratio = log(foreground_signal) - log(background_signal) = mu_hat. Rejection of H0 implies that the identified spot is brighter than background. Default is 0.5.
`sample` | Character string. The sample ID.
`image.type` | Character string. A triplet of IDs to characterize the type of images under study. They refer to the ImageType part of the original image or txt file names.

### Value

the plotted results and statistics of the signal-to-noise ratio

[Package CONFESS version 1.10.1 Index]