plotCorHeatmap-methods {ChIPQC} | R Documentation

## Generate Correlation Heatmap for ChIP samples

### Description

Generates correlation heatmap for ChIP samples.

### Methods

`signature(object = "ChIPQCexperiment", attributes, ...)`

  Generate correlation heatmap, including clustering dendrogram, for all the samples in an experiment that are associated with a peakset.

  attributes | character string, or vector of character strings, representing metadata field names, for use in labeling
  ... | additional parameters passed to `dba.plotHeatmap`

### Note

plotCorHeatmap uses `dba.plotHeatmap` for plotting.

### Author(s)

Rory Stark and Thomas Carroll

### See Also

ChIPQC-package, ChIPQCexperiment, dba.plotHeatmap

### Examples

    data(tamoxifen_QC)
    plotCorHeatmap(tamoxifen,attributes=c("Tissue","Condition","Replicate"))

[Package ChIPQC version 1.18.2 Index]