RelativeCrossCoverage-methods {ChIPQC} | R Documentation

## Retrieve the relative cross coverage values for a range of shift sizes

### Description

Retrieve the relative cross-coverage values for a range of shift sizes

### Methods

`signature(object = "ChIPQCexperiment")`

  Retrieve a `vector` of relative cross-coverage values for all samples in a ChIP-seq experiment, computed based on the maximal value (when extending the reads to the optimal fragment length) versus the cross-coverage values using non-extended reads.

`signature(object = "list")`

  Retrieve a `vector` of relative cross-coverage values for all samples in a list of ChIPQCsample objects, computed based on the maximal value (when extending the reads to the optimal fragment length) versus the cross-coverage values using non-extended reads.

`signature(object = "ChIPQCsample")`

  Retrieve the relative cross-coverage value for a sample, computed based on the maximal value (when extending the reads to the optimal fragment length) versus the cross-coverage values using non-extended reads.

### Author(s)

Thomas Carroll and Rory Stark

### See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

### Examples

    data(example_QCexperiment)
    RelativeCrossCoverage(exampleExp)
    RelativeCrossCoverage(QCsample(exampleExp,1))

[Package ChIPQC version 1.18.2 Index]