5176917a0b44eda5fa122e075019603f *DESCRIPTION
6266cd4977f900afcaf6a175785cdeff *INDEX
f65e3e659503a8be7f1a34c50b1c4368 *Meta/Rd.rds
e41ef08f03c27e466472c258471cef7e *Meta/data.rds
77a30dbd9a48297ae6e6ef2194a95267 *Meta/features.rds
0a86a1feb9ddf98609e7cd9f64a95ebd *Meta/hsearch.rds
eac73fcf45ba10c3fb5fff83d516b071 *Meta/links.rds
b1a4aab34a0450d8381da9dc8fd67558 *Meta/nsInfo.rds
d2883ee513f19c4acc59854428ac4f93 *Meta/package.rds
a25410ca0961fad980d0b4d620cd3556 *Meta/vignette.rds
f22c792c43684d8f72784c7dc6e5d3d3 *NAMESPACE
2ab266dc2d43775aa14ad711d1b68d78 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/ChIPSeqSpike
eea894d7e34747ea5a26af4e5bf5d798 *R/ChIPSeqSpike.rdb
5d36f2bee355fe90ed7f7daaf2cd7b6c *R/ChIPSeqSpike.rdx
b25a6ef65708280681dd50fb7c27dfae *data/datalist
fade11720c5a57972e754b0f82ffc2bc *data/ratio.RData
798d46e8bbbc03aabeed3d10bd64ed9a *data/result_estimateScalingFactors.RData
509e53f9726711bcc54a026b819831f7 *data/result_extractBinding.RData
6e45b4d0099ed5c86a167e0ffd69865b *doc/ChIPSeqSpike.R
5b05e393cf652375d4bab055c4ecd4c8 *doc/ChIPSeqSpike.Rmd
2fa9aecbca195a59dbf89dfc7d5cf6bb *doc/ChIPSeqSpike.pdf
0e47348204dd0833c3e9601098464a29 *doc/index.html
e1b0857cfa8b9dcb2985422937745d31 *extdata/bam_files/H3K79me2_0_dm3-filtered.bam
b68ec110a950b71a3b13baa15a5dec0a *extdata/bam_files/H3K79me2_0_hg19-filtered.bam
e59bb25fde9cda6353c2d9bbcabcaa3e *extdata/bam_files/H3K79me2_100_dm3-filtered.bam
80bd8e48d6dcda4d760ac1602c31cf9e *extdata/bam_files/H3K79me2_100_hg19-filtered.bam
d6725b83c9229d109a291c3e4b984e7c *extdata/bam_files/H3K79me2_50_dm3-filtered.bam
f3c641290c9b4376058edf23eb6f72ae *extdata/bam_files/H3K79me2_50_hg19-filtered.bam
b2e75b31f0316749aa36a3d9b7c4a761 *extdata/bam_files/input_0_hg19-filtered.bam
8b8148adb9f17d2736a37afedd48a7d6 *extdata/bam_files/input_100_hg19-filtered.bam
7673e3b31cb43524e138b75c1e159cbf *extdata/bam_files/input_50_hg19-filtered.bam
87573393051fa168552ed7cb39dfe7ef *extdata/bigwig_files/H3K79me2_0-filtered.bw
b39be71651fa682c7ca5e74471b99356 *extdata/bigwig_files/H3K79me2_100-filtered.bw
9484358670dca7886ac5c6b183633858 *extdata/bigwig_files/H3K79me2_50-filtered.bw
8a9d30626ddffebcfcb53d73f109debe *extdata/bigwig_files/input_0-filtered.bw
bf1a116f02a8b755d2090aefccd66726 *extdata/bigwig_files/input_100-filtered.bw
3b9df7633e8119547fcd288983cec485 *extdata/bigwig_files/input_50-filtered.bw
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/endoBam_empty.bam
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/exoBam_empty.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/input.wig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.wig
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wig.file_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty-RPM.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty.bw
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/endo.fa
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/exo.fa
54b6999818010f2f7cb7bd8dec20bbe1 *extdata/fastq_fasta_files/reads1.fastq.gz
4ef102a93caa7e70a8bad42948847a75 *extdata/fastq_fasta_files/reads2.fastq.gz
a009a7951861bd4ba706d2ef0111e2b4 *extdata/info.csv
fdbd4dfbae936b378365d7e043376e5a *extdata/test_coord.gff
1d9f6c9669202dd4a146d02723e429c9 *help/AnIndex
a71f0efaa7c938103714efbecf4daab4 *help/ChIPSeqSpike.rdb
7512c41551a4a66c0a8d6684c1c3c2dc *help/ChIPSeqSpike.rdx
55ffd7d7b57519e33d3361521309b7f9 *help/aliases.rds
2680790e1398f9221d1113767203456c *help/paths.rds
a78ca608533a36098b122ef7ec71dfd6 *html/00Index.html
15012d6359733d6724e006fb8d675c7f *html/ChIPSeqSpikeCore.html
4a4ad54ed2cf8a5d79b51f30ec933a4a *html/ChIPSeqSpikeDataset-class.html
643bd625274f7879a8c73d9e859c1fc1 *html/ChIPSeqSpikeDatasetBoost-class.html
fc2398a5702502628c6af50a1dce94b4 *html/ChIPSeqSpikeDatasetList-class.html
c81251b0b04e83ba2d1e936e18f4e0b6 *html/ChIPSeqSpikeDatasetListBoost-class.html
e728ed4322bacba5e051813f18d85dbc *html/Experiment-class.html
62ae817eab021d2b5ddbc14699a471b6 *html/ExperimentLoaded-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6232e8755e05a676b9ed23b48100f497 *html/averageBindingValues.html
f9763c1861f3b004b18b1e612736db6b *html/bigWigFile.html
0a224c4241ae0a5fce5504ecf72d5ea5 *html/boxplotSpike.html
c8ebaaaa2d982c11f53eaa6c12e924d3 *html/count.html
176c225a1d393fa60c15a222e0b161f7 *html/datasetList.html
5a084dbf6c06a1ad6e999411327fb1dc *html/estimateScalingFactors.html
581c887ba6f1d394cbcf7039d395c3b0 *html/exoCount.html
62705d309f25d71a09b75fc8c9823c4b *html/exogenousScalingFactor.html
3581f9dc255245d1620c0bfc58855b2a *html/experimentList.html
f50c5461ee39f07d5f0b0b1e2e7629e5 *html/exportBigWigs.html
d6df9254967845a46fe5d29e7edeaec8 *html/extractBinding.html
30d632c0f21eb7ff9b7f1ae5ed04835b *html/getAverageBindingValues.html
ab6b858799b6ec6ad8f57b99ebec115c *html/getBam.html
9bf7abb7e3ae7d303895829955103af3 *html/getBigWigFile.html
4f884b8b8c18d4406a5848166294e039 *html/getCount.html
5eadbecc7cd0361ef96f427f17153680 *html/getDatasetList.html
a025461b4ea2c99953f86180a65acb57 *html/getExoCount.html
d465525764b9f0e6c593635fdd896790 *html/getExogenousBam.html
c6461baf133664f99ef97cb910b81407 *html/getExogenousScalingFactor.html
eb08b20ccebb0d09a5ea8460153ff564 *html/getExpName.html
3ef4d3d66b43519275d8eb85063731d9 *html/getExperimentList.html
11b6c0f5266ee420f538eebb42a7060b *html/getExperimentListBigWigs.html
db76edaa81a765b8ed090775fd841b0a *html/getLoadedData.html
1100c6ce8f404f592ba5f5e2977719d9 *html/getMatBindingValues.html
ebbdcde362aa4c9a0c179e7cf80b4712 *html/getRatio.html
b95bdb3ba4aef457de4b33b9aaa08900 *html/getScalingFactor.html
e66f3884b8b71b0fc82333508580ef73 *html/inputSubtraction.html
2e86b5cb41fe9dfcc50d4f7c6d52fc5c *html/matBindingValues.html
de16e2979caa2274700e7bb056f3d5df *html/plotCor.html
1e679f8cebf3752a7d6597ef1d34db1c *html/plotHeatmaps.html
8fc45fd4c2b65021d94c0b2a9f399023 *html/plotProfile.html
8515d85f003a37793bc79a44a4d2828f *html/plotTransform.html
d61953488aed8acfa47440bd4376bceb *html/ratio.html
c27a60b0bc620b9614e3e6506dd723f4 *html/result_data.html
404b41227f4cbc9da309db926101eebb *html/scaling.html
85e23a1db8865e8cf6943701aaa2ccee *html/scalingFactor.html
d83e99c918df6c3eddf5bcbedc733319 *html/spikeDataset.html
336a6d6b25b0976f1794e1f8394dc701 *html/spikePipe.html
e2236dd22b99ec1ff6dc8e33458309b7 *html/spikeSummary.html
