patternMarkers {CoGAPS} | R Documentation

## compute pattern markers statistic

### Description

calculate the most associated pattern for each gene

### Usage

    patternMarkers(object, threshold = "all", lp = NA)

    ## S4 method for signature 'CogapsResult'
    patternMarkers(object, threshold = "all",
      lp = NA)

### Arguments

`object` | an object of type CogapsResult
`threshold` | the type of threshold to be used. The default "all" will distribute genes into pattern with the lowest ranking. The "cut" thresholds by the first gene to have a lower ranking, i.e. better fit to, a pattern.
`lp` | a vector of weights for each pattern to be used for finding markers. If NA markers for each pattern of the A matrix will be used.

### Value

By default a non-overlapping list of genes associated with each `lp`. If `full=TRUE` a data.frame of genes rankings with a column for each `lp` will also be returned.

[Package CoGAPS version 3.2.40 Index]