findSNVs {CrispRVariants} | R Documentation

## Find frequent SNVs

### Description

Find single nucleotide variants (SNVs) above a specified frequency in a table of variants.

### Usage

    findSNVs(obj, ...)

    ## S4 method for signature 'CrisprSet'
    findSNVs(obj, ..., freq = 0.25,
      include.chimeras = TRUE)

### Arguments

`obj` | An object containing variant counts
`...` | additional arguments
`freq` | minimum frequency snv to return (Default: 0.25)
`include.chimeras` | include chimeric reads when calculating SNV frequencies (Default: TRUE)

### Value

A vector of SNVs and their frequencies

### Author(s)

Helen Lindsay

[Package CrispRVariants version 1.10.1 Index]