module.compare {DEComplexDisease} | R Documentation

## Compare and plot the overlap among predicted modules

### Description

Plot the overlap among predicted DEG modules

### Usage

    module.compare(res.module1, res.module2, used.mods1 = NULL,
      used.mods2 = NULL, type = c("model", "max.patients", "max.genes")[1],
      max.n1 = 30, max.n2 = max.n1, show.overlap = TRUE, cex = 10)

### Arguments

`res.module1` | a 'seed.module' or 'cluster.module' object returned by `seed.module` or `cluster.module`
`res.module2` | a 'seed.module' or 'cluster.module' object returned by `seed.module` or `cluster.module`
`used.mods1` | the modules to display
`used.mods2` | the modules to display
`type` | the module type to display
`max.n1` | the maximum number of modules to display. If 'used.mods1' is set, this option will be ignored.
`max.n2` | the maximum number of modules to display. If 'used.mods2' is set, this option will be ignored.
`show.overlap` | boolean, display the overlap number
`cex` | the font cex to display the overlap number

### Details

This function is to compare the modules from different studies, e.g. the different diseases or the different data for the same disease.

### Value

The heatmap plot for gene overlaps.

### Author(s)

Guofeng Meng

### Examples

    module.compare(res.mod1,res.mod2, type='model', max.n1=5)

[Package DEComplexDisease version 1.2.0 Index]