degPlotWide {DEGreport} | R Documentation

## Plot selected genes on a wide format

### Description

Plot selected genes on a wide format

### Usage

    degPlotWide(counts, genes, group, metadata = NULL, batch = NULL)

### Arguments

`counts` | DESeq2::DESeqDataSet object or expression matrix
`genes` | character genes to plot.
`group` | character, colname in colData to color points and add different lines for each level
`metadata` | data.frame, information for each sample. Not needed if DESeq2::DESeqDataSet given as counts.
`batch` | character, colname in colData to shape points, normally used by batch effect visualization

### Value

ggplot showing the expresison of the genes on the x axis

### Examples

    data(humanGender)
    library(DESeq2)
    idx <- c(1:10, 75:85)
    dse <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx],
      colData(humanGender)[idx,], design=~group)
    dse <- DESeq(dse)
    degPlotWide(dse, rownames(dse)[1:10], group = "group")

[Package DEGreport version 1.18.1 Index]