computeLambdaOnChr {DEScan2} | R Documentation

## computeLambdaOnChr

### Description

computes the lambdas on a chromosome for the winVector windows and other two windows (min/maxCompWinWidth) to compare with

### Usage

    computeLambdaOnChr(chrGRanges, winVector = seq_len(20), minChrRleWComp,
      minCompWinWidth = 5000, maxChrRleWComp, maxCompWinWidth = 10000,
      verbose = TRUE)

### Arguments

`chrGRanges` | the GRanges representing the reads of the chromosome.
`winVector` | the of width of the windows used to compute the coverage.
`minChrRleWComp` | and Rle object within coverage of window of width minCompWinWidth.
`minCompWinWidth` | the width of the window used for the coverage of minChrRleWComp in bases.
`maxChrRleWComp` | and Rle object within coverage of window of width minCompWinWidth.
`maxCompWinWidth` | the width of the window used for the coverage of maxChrRleWComp in bases.
`verbose` | verbose flag.
`binSize` | the size of the bin in bases.

### Value

an RleList where each element is a window of winVector, within an Rle representing the lambda computed for that window.

[Package DEScan2 version 1.2.1 Index]