plot.doqtl {DOQTL} | R Documentation

## Plot a QTL

### Description

Given a genome scan produced by scanone, create a plot of the LOD score across all chromosomes.

### Usage

      ## S3 method for class 'doqtl'
    plot(x, stat.name = c("lod", "neg.log10.p"),  sig.thr = NULL, sig.col = "red", ...)

### Arguments

`x` | DOQTL object containing the LOD score and model coefficients.
`stat.name` | Character string containing the name of the mapping statistic.
`sig.thr` | Numeric matrix containing significance thresholds. Columns must be labelled "A" and "X", in that order and should contain thresholed produced by `get.sig.thr()`.
`sig.col` | Colors to use when plotting the significance thresholds above. Must be the same length as the nuber of rows in sig.thr.
`...` | Additional arguments to pass to plot.

### Value

Creates a QTL plot.

### Author(s)

Daniel Gatti

### Examples

      ## Not run:
        qtl = scanone(pheno = pheno, pheno.col = 1, probs = probs, snps = snps)
    	plot(qtl)

    ## End(Not run)

[Package DOQTL version 1.18.0 Index]