DaMiR.Clustplot {DaMiRseq} | R Documentation

## Expression data clustering and heatmap

### Description

The function helps to draw a clustering dendrogram and a heatmap of expression data.

### Usage

    DaMiR.Clustplot(data, df, type_row = c("euclidean", "correlation"),
      type_col = c("euclidean", "correlation"))

### Arguments

`data` | A SummarizedExperiment object or a matrix or a data.frame where rows and cols should be, respectively, observations and features
`df` | A data frame with class and (optionally) known variables; at least one column with 'class' label must be included
`type_row` | The metric to be used to cluster rows. Either "euclidean" or "correlation" is allowed; default is "euclidean"
`type_col` | The metric to be used to cluster cols. Either "euclidean" or "correlation" is allowed; default is "euclidean"

### Value

A clustering dendrogram and heatmap.

### Author(s)

Mattia Chiesa, Luca Piacentini

### Examples

    # use example data:
    data(data_norm)
    data(df)
    # use the first 100 genes:
    data_norm_red<-data_norm[1:100,]
    # Draw heatmap: samples (cols) per genes (rows)
    # and use variable annotation:
    DaMiR.Clustplot(data=data_norm_red,
    df=df, type_row="correlation", type_col="correlation")

[Package DaMiRseq version 1.6.2 Index]