deepblue_select_expressions {DeepBlueR} | R Documentation

## select_expressions

### Description

Select expressions (by their name or ID) as genomic regions from the specified model.

### Usage

    deepblue_select_expressions(expression_type = NULL, sample_ids = NULL,
      replicas = NULL, identifiers = NULL, projects = NULL,
      gene_model = NULL, user_key = deepblue_options("user_key"))

### Arguments

`expression_type` | - A string (expression type (supported: 'gene'))
`sample_ids` | - A string or a vector of string (id(s) of selected sample(s))
`replicas` | - A int or a vector of int (replica(s))
`identifiers` | - A string or a vector of string (identifier(s) (for genes: ensembl ID or ENSB name).)
`projects` | - A string or a vector of string (projects(s))
`gene_model` | - A string (gene model name)
`user_key` | - A string (users token key)

### Value

id - A string (query id)

### See Also

Other Expression data: `deepblue_list_expressions`

### Examples

    genes_names =
        c('CCR1', 'CD164', 'CD1D', 'CD2', 'CD34', 'CD3G', 'CD44')
    deepblue_select_expressions(
        expression_type="gene",
        sample_ids="s10205",
        identifiers = genes_names,
        gene_model = "gencode v23")

[Package DeepBlueR version 1.8.1 Index]