deepblue_aggregate {DeepBlueR} | R Documentation

## aggregate

### Description

Summarize the data_id content using the regions specified in ranges_id as boundaries. Use the fields @AGG.MIN, @AGG.MAX, @AGG.SUM, @AGG.MEDIAN, @AGG.MEAN, @AGG.VAR, @AGG.SD, @AGG.COUNT in 'get_regions' command 'format' parameter to retrieve the computed values minimum, maximum, median, mean, variance, standard deviation and number of regions, respectively.

### Usage

    deepblue_aggregate(data_id = NULL, ranges_id = NULL, column = NULL,
      user_key = deepblue_options("user_key"))

### Arguments

`data_id` | - A string (id of the query with the data)
`ranges_id` | - A string (id of the query with the regions range)
`column` | - A string (name of the column that will be used in the aggregation)
`user_key` | - A string (users token key)

### Value

regions - A string (query id of this aggregation operation)

### See Also

Other Operating on the data regions: `deepblue_binning`, `deepblue_count_regions`, `deepblue_coverage`, `deepblue_distinct_column_values`, `deepblue_extend`, `deepblue_filter_regions`, `deepblue_flank`, `deepblue_get_experiments_by_query`, `deepblue_get_regions`, `deepblue_input_regions`, `deepblue_intersection`, `deepblue_merge_queries`, `deepblue_overlap`, `deepblue_query_cache`, `deepblue_query_experiment_type`, `deepblue_score_matrix`, `deepblue_select_annotations`, `deepblue_select_experiments`, `deepblue_select_regions`, `deepblue_tiling_regions`

### Examples

    annotation_id = deepblue_select_annotations(
        annotation_name="CpG Islands",
        genome="hg19", chromosome="chr1")
    data_id = deepblue_select_experiments(
        experiment_name="E002-H3K9ac.narrowPeak.bed")
    deepblue_aggregate(
        data_id = data_id,
        ranges_id=annotation_id,
        column = "SCORE")

[Package DeepBlueR version 1.8.1 Index]