GetMultiPP {EBSeq} | R Documentation

## Posterior Probability of Each Transcript

### Description

'GetMultiPP' generates the Posterior Probability of being each pattern of each transcript based on the EBMultiTest output.

### Usage

    GetMultiPP(EBout)

### Arguments

`EBout` | The output of EBMultiTest function.

### Value

`PP` | The poster probabilities of being each pattern.
`MAP` | Gives the most likely pattern.
`Patterns` | The Patterns.

### Author(s)

Ning Leng

### References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

### See Also

GetPPMat

### Examples

    data(MultiGeneMat)
    MultiGeneMat.small = MultiGeneMat[201:210,]

    Conditions = c("C1","C1","C2","C2","C3","C3")
    PosParti = GetPatterns(Conditions)
    Parti = PosParti[-3,]
    MultiSize = MedianNorm(MultiGeneMat.small)

    MultiOut = EBMultiTest(MultiGeneMat.small,
    	NgVector=NULL, Conditions=Conditions,
    	AllParti=Parti, sizeFactors=MultiSize,
    	maxround=5)
    MultiPP = GetMultiPP(MultiOut)

[Package EBSeq version 1.22.1 Index]