LikefunMulti {EBSeq} | R Documentation

## Likelihood Function of the NB-Beta Model In Multiple Condition Test

### Description

'LikefunMulti' specifies the Likelihood Function of the NB-Beta Model In Multiple Condition Test.

### Usage

    LikefunMulti(ParamPool, InputPool)

### Arguments

`ParamPool` | The parameters that will be estimated in EM.
`InputPool` | The control parameters that will not be estimated in EM.

### Value

The function will return the log-likelihood.

### Author(s)

Ning Leng

### References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

### Examples

    #x1 = c(.6,.7,.3)
    #Input = matrix(rnorm(100,100,1),ncol=10)
    #RIn = matrix(rnorm(100,200,1),ncol=10)
    #InputPool = list(list(Input[,1:5],Input[,6:10]),
    #	Input, cbind(rep(.1, 10), rep(.9,10)), 1,
    #	RIn, list(RIn[,1:5],RIn[,6:10]),
    #	10, rbind(c(1,1),c(1,2)))
    #LikefunMulti(x1, InputPool)

[Package EBSeq version 1.22.1 Index]