infere.con2ec {FELLA} | R Documentation

## Infer connections to EC

### Description

Function `infere.con2ec` infers network connections to KEGG EC families by passing through genes. This assumes that the category being mapped to enzymes is above them.

### Usage

    infere.con2ec(ids, ent, ent2gene, gene2enzyme)

### Arguments

`ids` | Character vector of identifiers to map. For example, all the KEGG pathways
`ent` | Character, entity that we are mapping (one of `"pathway"` and one of `"module"`)
`ent2gene` | Named character vector, names are the entity `ent` and values are genes
`gene2enyzme` | Named character vector, names are genes and values are EC enzyme families category Character, one of:

### Value

Two-column data frame. Column `"from"` contains the KEGG enzyme families whereas `"to"` contains the entity `ent`.

### Examples

    ids <- "hsa00010"
    ent <- "pathway"
    ent2gene <- c("hsa00010" = "hsa:10", "hsa00010" = "hsa:120")
    gene2enzyme <- c("hsa:10" = "1.1.1.1", "hsa:120" = "1.2.3.4")
    FELLA:::infere.con2ec(ids, ent, ent2gene, gene2enzyme)

[Package FELLA version 1.2.0 Index]