FemModShow {FEM} | R Documentation

## Generates a figure showing the inferred FEM module(s)

### Description

This function generates a network representation of an inferred FEM module.

### Usage

    FemModShow(mod, name, fem.o, mode="Integration")

### Arguments

`mod` | the module of the FEM result object for which a figure is to be generated
`name` | the name for the output figure file
`fem.o` | FEM result object generated by DoFEMbi, DoEpiMod, or DoExpMod
`mode` | There are three modes: "Integration","Epi","Epx". "Integration" means the module is from DoFEMbi, "Epi" means the module is from DoEpiMod, "Exp" means the module is from DoExpMod.

### Value

An igraph object representing the module. At the same time, the module graph is generated and saved as a "X.pdf" file with "X" the name given in the argument to the function.

### Author(s)

"Yinming Jiao"<20907099@zju.edu.cn>, "Andrew E Teschendorff"<andrew@picb.ac.cn>

### References

A systems-level integrative framework for genome-wide DNA methylation and gene expression data identifies differential gene expression modules under epigenetic control. Jiao Y, Widschwendter M, Teschendorff AE. Bioinformatics. 2014;30(16):2360-2366

### Examples

    data(Realdata)
    FemModShow(Realdata$fembi.o$topmod$HAND2,name="HAND2",Realdata$fembi.o)

[Package FEM version 3.10.0 Index]