examdata_degs {FoldGO} | R Documentation

## Differential expressed genes used in examples

### Description

We used two datasets in examples:

1. RNA-seq experiment on auxin treatment of Arabidopsis thaliana roots (degenes)

2. RNA-seq experiment on mRNA differential expression in LNCaP cells expressing the wild-type androgen receptor (AR-WT) or the ligand-independent AR-V7 splice variant (degenes_hum)

### Usage

    degenes

    degenes_hum

### Format

A dataframes with 4 variables and 789 and 2079 for A. thaliana and H. sapiens correspondingly, where colnames are:

GeneID

  Gene identifier

FC

  fold-change value

pval

  p-value

qval

  Benjamini-Yekutieli adjusted p-value

### Source

1. A. thaliana and auxin: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97258

2. H. sapiens LNCap AR-V7: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71334

### Examples

    # load degenes from RNA-seq experiment on auxin treatment of Arabidopsis thaliana roots
    data("degenes")

[Package FoldGO version 1.0.2 Index]