getAllResults {FourCSeq} | R Documentation

## FourCSeq analysis results

### Description

Using the `DESEeq2` function `results`, `getAllResults` extracts results from a FourCSeq analysis giving base means across samples, log2 fold changes, standard errors, test statistics, p-values and adjusted p-values for all pair-wise conditions tested.

### Usage

    getAllResults(object, ...)

### Arguments

`object` | `FourC` object for which z-scores and differences have been calculated.
`...` | Additional parameters that can be passed to `results`.

### Value

DataFrame of results columns for all pairwise tests, with metadata columns of coefficient and test information

### Author(s)

Felix A. Klein, felix.klein@embl.de

### See Also

`results`

### Examples

    data(fcf, package="FourCSeq")

    fcf <- getDifferences(fcf, referenceCondition="WE_68h")

    results <- getAllResults(fcf)
    results

[Package FourCSeq version 1.16.0 Index]