plotZScores {FourCSeq} | R Documentation

## Plot z-score results.

### Description

`plotZScores` generates plots to check the z-score calculation.

### Usage

    plotZScores(object, cols = NULL, plotWindows = c(1e+05, 1e+06),
      controls = NULL, textsize = 20, txdb = NULL, plotSingle = FALSE)

### Arguments

`object` | A `FourC` object.
`cols` | A character or numeric vector used to subset the columns of `object`.
`plotWindows` | Window sizes around the viewpoint for which plots are generated.
`controls` | Auxiliary `GRanges` object that contains information about the viewpoint and closest gene TSS.
`textsize` | Plot parameter passed to the plotting function if
`txdb` | Auxiliary `TranscriptDb` object that contains gene models for the investigated organism.
`plotSingle` | If set to true each selected column will be plotted in a single plot.

### Details

Plots are generated to visualize the results of the getZScores function

### Author(s)

Felix A. Klein, felix.klein@embl.de

### See Also

`FourC`, `getZScores`, `distFitMonotone`, `distFitMonotoneSymmetric`

### Examples

    data(fcf, package="FourCSeq")

    plotZScores(fcf)

[Package FourCSeq version 1.16.0 Index]