GENESIS-defunct         Defunct functions in package 'GENESIS'
GENESIS-deprecated      Deprecated functions in package 'GENESIS'
GENESIS-package         GENetic EStimation and Inference in Structured
                        samples (GENESIS): Statistical methods for
                        analyzing genetic data from samples with
                        population structure and/or relatedness
HapMap_ASW_MXL_KINGmat
                        Matrix of Pairwise Kinship Coefficient
                        Estimates for the combined HapMap ASW and MXL
                        Sample found with the KING-robust estimator
                        from the KING software.
admixMap                admixMap
admixMapMM              admixMapMM
assocTestAggregate      Aggregate Association Testing
assocTestMM             SNP Genotype Association Testing with Mixed
                        Models
assocTestSingle         Genotype Association Testing with Mixed Models
fitNullMM               Fit a Mixed Model Under the Null Hypothesis
fitNullModel            Fit a Model Under the Null Hypothesis
fitNullReg              Fit a Regression Model Under the Null
                        Hypothesis
kin2gds                 Store kinship matrix in GDS
king2mat                Convert KING text output to an R Matrix
kingToMatrix            Convert KING text output to an R Matrix
makeSparseMatrix        Make a sparse matrix from a dense matrix or a
                        table of pairwise values
pcair                   PC-AiR: Principal Components Analysis in
                        Related Samples
pcairPartition          Partition a sample into an ancestry
                        representative 'unrelated subset' and a
                        'related subset'
pcrelate                PC-Relate: Model-Free Estimation of Recent
                        Genetic Relatedness
pcrelate,GenotypeData-method
                        PC-Relate: Model-Free Estimation of Recent
                        Genetic Relatedness
pcrelateMakeGRM         Creates a Genetic Relationship Matrix (GRM) of
                        Pairwise Kinship Coefficient Estimates from
                        PC-Relate Output
pcrelateReadInbreed     Create a Table of Inbreeding Coefficient
                        Estimates from PC-Relate Output
pcrelateReadKinship     Create a Table of Pairwise Kinship Coefficient
                        and IBD Sharing Probability Estimates from
                        PC-Relate Output
pcrelateToMatrix        Creates a Genetic Relationship Matrix (GRM) of
                        Pairwise Kinship Coefficient Estimates from
                        PC-Relate Output
plot.pcair              PC-AiR: Plotting PCs
print.pcair             PC-AiR: Principal Components Analysis in
                        Related Samples
sample_annotation_1KG   Annotation for 1000 genomes Phase 3 samples
varCompCI               Variance Component Confidence Intervals
