filterGeneSets {GSVA} | R Documentation

## Filter gene sets

### Description

Filters gene sets through a given minimum and maximum set size.

### Usage

    ## S4 method for signature 'list'
    filterGeneSets(gSets, min.sz=1, max.sz=Inf)
    ## S4 method for signature 'GeneSetCollection'
    filterGeneSets(gSets, min.sz=1, max.sz=Inf)

### Arguments

`gSets` | Gene sets given either as a `list` or a `GeneSetCollection` object.
`min.sz` | Minimum size.
`max.sz` | Maximum size.

### Details

This function filters the input gene sets according to a given minimum and maximum set size.

### Value

A collection of gene sets that meet the given minimum and maximum set size.

### Author(s)

J. Guinney

### References

Hänzelmann, S., Castelo, R. and Guinney, J. GSVA: Gene set variation analysis for microarray and RNA-Seq data. BMC Bioinformatics, 14:7, 2013.

### See Also

`computeGeneSetsOverlap`

### Examples

    geneSets <- list(set1=as.character(1:4), set2=as.character(4:10))

    filterGeneSets(geneSets, min.sz=5)

[Package GSVA version 1.30.0 Index]