readWhippetPSIfiles {GeneStructureTools} | R Documentation

## Read in a list of whippet .psi.gz files and format as a data.frame

### Description

Read in a list of whippet .psi.gz files and format as a data.frame

### Usage

    readWhippetPSIfiles(files, attribute = "Total_Reads", maxNA = NA)

### Arguments

`files` | vector of *.psi.gz file names
`attribute` | which attribute from the PSI files to use (Total_Reads, Psi, CI_width)
`maxNA` | maximum number of NA values allowed before a site is removed

### Value

data.frame with junction counts for all files

### Author(s)

Beth Signal

### See Also

Other whippet data processing: `coordinates`, `diffSplicingResults`, `filterWhippetEvents`, `formatWhippetEvents`, `junctions`, `readCounts`, `readWhippetDIFFfiles`, `readWhippetDataSet`, `readWhippetJNCfiles`, `whippetTranscriptChangeSummary`

### Examples

    whippetFiles <- list.files(system.file("extdata","whippet/",
    package = "GeneStructureTools"), full.names = TRUE)
    psiFiles <- whippetFiles[grep(".psi", whippetFiles)]
    whippetPSI <- readWhippetPSIfiles(psiFiles)

[Package GeneStructureTools version 1.2.1 Index]