formatWhippetEvents {GeneStructureTools} | R Documentation

## Format Whippet co-ordinates as a GRanges object

### Description

Format Whippet co-ordinates as a GRanges object

### Usage

    formatWhippetEvents(whippet)

### Arguments

`whippet` | data.frame containing event location information. May be generated by readWhippetDIFFfiles()

### Value

GRanges object with events

### Author(s)

Beth Signal

### See Also

Other whippet data processing: `coordinates`, `diffSplicingResults`, `filterWhippetEvents`, `junctions`, `readCounts`, `readWhippetDIFFfiles`, `readWhippetDataSet`, `readWhippetJNCfiles`, `readWhippetPSIfiles`, `whippetTranscriptChangeSummary`

### Examples

    whippetFiles <- list.files(system.file("extdata","whippet/",
    package = "GeneStructureTools"), full.names = TRUE)
    diffFiles <- whippetFiles[grep(".diff", whippetFiles)]
    whippetDiffSplice <- readWhippetDIFFfiles(diffFiles)
    whippetCoords <- formatWhippetEvents(whippetDiffSplice)

[Package GeneStructureTools version 1.2.1 Index]