makeGenericArray {GenomeGraphs} | R Documentation

## Creates an object of class GenericArray

### Description

Creates an object of class Generic Array representing microarray data. This could be gene expression, array CGH, etc.

### Usage

    makeGenericArray(intensity, probeStart, probeEnd, trackOverlay, dp = NULL)

### Arguments

`intensity` | Matrix of intensities, probes in the rows, samples in the columns
`probeStart` | Vector of start positions for the probes
`probeEnd` | Vector of end positions for probes (optional)
`trackOverlay` | Object of class TrackOverlay, needs to be added if overlays should be plotted as well
`dp` | Object of class DisplayPars which handles the display parameters for plotting

### Value

Object of class GenericArray

### Author(s)

Jim Bullard and Steffen Durinck

### References

BMC bioinformatics 2009

### See Also

gdPlot

### Examples

    showClass("GenericArray")

[Package GenomeGraphs version 1.42.0 Index]