BaseTrack-class {GenomeGraphs} | R Documentation

## Class "BaseTrack" represents base specific data

### Description

Represents specific data, e.g. how many times was every base sequenced

### Objects from the Class

Objects can be created by calls of the form `new("BaseTrack", ...)`.

### Slots

`base`:

  Object of class `"numeric"`. Is a vector of base positions

`value`:

  Object of class `"numeric"`. Is a vector of corresponding values for every base

`strand`:

  Object of class `"character"` represents that DNA strand

`dp`:

  Object of class DisplayPars to control various features of how the track is displayed.

### Extends

Class `"gdObject"`, directly.

### Methods

show

  `signature(object = "BaseTrack")`: ...

### Author(s)

Steffen Durinck

### References

http://www.stat.berkeley.edu/~steffen/

### See Also

objects to See Also as `gdPlot`

### Examples

    if (interactive()) {
    data("exampleData", package="GenomeGraphs")
    ga <- new("GenomeAxis")
    bt <- new("BaseTrack", base = yeastCons1[,1], value = yeastCons1[,2],
              dp = DisplayPars(color = "darkblue"))
    gdPlot(list(ga, bt))
    }

[Package GenomeGraphs version 1.42.0 Index]