glMDSPlot {Glimma} | R Documentation

## Glimma MDS Plot

### Description

Glimma MDS Plot

Draw an interactive MD plot from a DGEList object with distances calculated from most variable genes.

### Usage

    glMDSPlot(x, ...)

### Arguments

`x` | the matrix containing the gene expressions.
`...` | additional arguments.

### Value

Draws a two-panel interactive MDS plot in an html page. The left panel contains the plot between two MDS dimensions, with annotations displayed on hover. The right panel contains a bar plot of the eigenvalues of each dimension, clicking on any of the bars will plot the corresponding dimension against the next dimension.

### Author(s)

Shian Su, Gordon Smyth

### See Also

`glMDSPlot.default`, `glMDSPlot.DGEList`

### Examples

    data(lymphomaRNAseq)
    genotype <- relevel(lymphomaRNAseq$samples$group, "Smchd1-null")

    glMDSPlot(lymphomaRNAseq, labels=1:7, groups=genotype)

[Package Glimma version 1.10.1 Index]