# Global test for groups of variables via model comparisons

## Documentation for package ‘GlobalAncova’ version 4.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bindata | Simulated binary data
colon.normal | Gene expression data
colon.pheno | Covariate information for the colon data
colon.tumour | Gene expression data
GABroad | Gene set testing of gene set databases using GlobalAncova
GAGO | Gene set testing of gene set databases using GlobalAncova
GAhier | Class '"GAhier"'
GAhier-class | Class '"GAhier"'
GAKEGG | Gene set testing of gene set databases using GlobalAncova
gGlobalAncova | Generalized GlobalAncova group test
gGlobalAncova.hierarchical | Hierarchical testing procedure using generalized GlobalAncova
GlobalAncova | Global test for differential gene expression
GlobalAncova-method | Global test for differential gene expression
GlobalAncova-methods | Methods for Function GlobalAncova
GlobalAncova.closed | Closed testing procedure for testing several groups of genes using GlobalAncova
GlobalAncova.closed-method | Closed testing procedure for testing several groups of genes using GlobalAncova
GlobalAncova.closed-methods | Methods for Function GlobalAncova.closed
GlobalAncova.decomp | GlobalAncova with sequential and type III sum of squares decomposition and adjustment for global covariates
pair.compare | Pairwise comparisons of factor levels within GlobalAncova
pathways | Cancer related pathways
phenodata | Covariate information for the van t'Veer data
Plot.all | Combined visualization of sequential decomposition and influence of single genes on the GlobalAncova statistic
Plot.features | Features Plot for generalized Global Ancova
Plot.genes | Genes Plot for Global Ancova
Plot.genes-method | Genes Plot for Global Ancova
Plot.genes-methods | Methods for Function Plot.genes
Plot.hierarchy | Class '"GAhier"'
Plot.hierarchy-method | Class '"GAhier"'
Plot.sequential | Visualization of sequential decomposition
Plot.subjects | Subjects Plot for GlobalAncova
Plot.subjects-method | Subjects Plot for GlobalAncova
Plot.subjects-methods | Methods for Function Plot.subjects
results | Class '"GAhier"'
results-method | Class '"GAhier"'
show-method | Class '"GAhier"'
sigEndnodes | Class '"GAhier"'
sigEndnodes-method | Class '"GAhier"'
vantVeer | Gene expression data